CX289131

Overview
NameCX289131
Unique NameCX289131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14456 contig Ccv1_Contig14456:377..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.532e-34
Identity = 80/157 (50.96%), Postives = 104/157 (66.24%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTY-NECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFFFCRVCGQFRRFGXXXXXXXXXXXXAHDXXXXXXXXXXXXXFKDLIDFIDRKEAEIKEILKRRNSDNKRPSQSSDG*TNS 470
            GFAFQRDSPLA+D+STAILQLSE G+L+KIH KWL Y +ECSM +S ++   S+LSLKSFWGLFLICGI CF+AL  FF RV  Q++R              +               FK+LI  +D++EAEIKEILK+++S   + +QS+ G + S
Sbjct:  801 GFAFQRDSPLAVDMSTAILQLSEEGELEKIHRKWLNYKHECSMQISNSE--DSQLSLKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSE--PSRSGRGSRAPSFKELIKVVDKREAEIKEILKQKSSKKLKSTQSAAGTSQS 953          
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 4.469e-29
Identity = 70/151 (46.36%), Postives = 95/151 (62.91%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTY-NECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFFFCRVCGQFRRFGXXXXXXXXXXXXAHDXXXXXXXXXXXXXFKDLIDFIDRKEAEIKEILKRRNSDNKRPSQSS 452
            GFAFQRDSPLA+D+STAILQL+E G L+KI  KWLTY +EC+M +S  D    ++S++SFWGLFLICG+  F+AL  F  +V  Q++R              + +             FKDLI  +D++EAEIKE+LK ++S   +  QSS
Sbjct:  794 GFAFQRDSPLAVDMSTAILQLAEEGKLEKIRKKWLTYDHECTMQIS--DTENYQISVQSFWGLFLICGVVWFIALTLFCWKVFWQYQRL--RPEESDEVQARSEEAGSSRGKSLRAVSFKDLIKVVDKREAEIKEMLKEKSSKKLKDGQSS 940          
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.915e-25
Identity = 61/144 (42.36%), Postives = 84/144 (58.33%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECS-MDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFFFCRVCGQFRRFGXXXXXXXXXXXXAHDXXXXXXXXXXXXXFKDLIDFIDRKEAEIKEILKRRNSDN 431
            GFAF RDSPLAID+STAIL LSE G LQKIH+KWL+ + CS ++ S +D    +L L+SFWGLFL+CGI+CF+AL  +F ++   F R G              +              +  + + D KE E K  +KR+ +D+
Sbjct:  770 GFAFPRDSPLAIDMSTAILGLSETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQLKLRSFWGLFLVCGISCFIALFIYFFKIVRDFFRHGKYD----------EEATVPSPESSRSKSLQTFLAYFDEKEDESKRRMKRKRNDD 903          
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.488e-24
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFFFCRVCGQ 254
            GFAF RDSPLAIDLSTAIL+L+ENGDLQ+IH+KWL  N C+  L  A+    RL LKSFWGLFLICG+AC LAL  +F ++  Q
Sbjct:  773 GFAFPRDSPLAIDLSTAILELAENGDLQRIHDKWLMKNACT--LENAELESDRLHLKSFWGLFLICGVACLLALFLYFVQIIRQ 854          
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.102e-22
Identity = 58/150 (38.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFFFCRVCGQFRRFGXXXXXXXXXXXXAHDXXXXXXXXXXXXXFKDLIDFIDRKEAEIKEILKR-RNSDNKRPSQS 449
            GFAF RDSPLA+D+STAIL LSE G+LQKIH++WL+ + CS       G   +L++ SFWG+FL+ GIAC +AL   F ++   F +                +              +  + F+D KE E K  LKR RN+D+   + S
Sbjct:  770 GFAFPRDSPLAVDMSTAILGLSETGELQKIHDRWLSKSNCSSPHGSQSGDSEQLNVHSFWGMFLVVGIACLVALFIHFFKIIRDFCK---------DTPEVVVEEAIPSPKSSRLTKLQTFLAFVDEKEEETKRRLKRKRNNDHSMNANS 910          
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.303e-20
Identity = 61/142 (42.96%), Postives = 76/142 (53.52%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECSM-DLSPADGGGSRLSLKSFWGLFLICGIACFLALIFFFCRVCGQFRRFGXXXXXXXXXXXXAHDXXXXXXXXXXXXXFKDLIDFIDRKEAEIKEILKRRNS 425
            GFAF RDSPL++DLSTAIL+LSENGDLQ+IH+KWL  +  SM   S  D    RL + SF  LFLICG+AC  AL    C +  Q+ R              A D             F   + F DR+EA+I+   K + S
Sbjct:  775 GFAFPRDSPLSVDLSTAILELSENGDLQRIHDKWLASDMSSMSQASELDQDPDRLDVYSFSALFLICGLACIFALAIHACNLFYQYSRHA-AEEDPAALQPSASDGSRSLSRRSKLQSF---LSFADRREADIRRAAKEKAS 912          
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.903e-20
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFFFCRVCGQF 257
            GFAF R+SPLA+D+S AILQLSENGD+Q+I +KWL    CS  L  A+    RL LKSFWGLF++CG+AC LAL  +   +  QF
Sbjct:  763 GFAFPRNSPLAVDVSAAILQLSENGDMQRIRDKWLLRKACS--LQGAEIEVDRLELKSFWGLFVVCGVACVLALAVYTVLMIRQF 845          
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.543e-16
Identity = 54/147 (36.73%), Postives = 73/147 (49.66%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFFFCRVCGQFRRFGXXXXXXXXXXXXAHDXXXXXXXXXXXXXFKDLIDFIDRKEAEIKEILKRRNSDNKRPS 443
            GFAF+RDSPLAID+STAIL+LSE   LQ+I  KWL    C+   S  +   ++L LKSF GL+L+C      A + F  R+  QF R+                               D ++F+D KE  IK + +R +  N  PS
Sbjct:  766 GFAFKRDSPLAIDMSTAILKLSETRKLQEIRKKWLCKTNCA-GKSNWNPEPNQLHLKSFKGLYLVCIAITVSAFLVFVLRMIRQFVRY----RRMERTSSMPRASWSASPTLRLRELVFDFVEFVDEKEEAIKRMFRRSDDSNNNPS 907          
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR28_ARATH (Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.543e-13
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKW-LTYNECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFF 233
            GFAF R+SPL  D+S AIL +++  ++Q I NKW +  N+C    +      +RLSL+SFWGLFLI GIA FLAL+ F
Sbjct:  760 GFAFPRNSPLTGDVSKAILNVTQGDEMQHIENKWFMKQNDCPDPKTALSS--NRLSLRSFWGLFLIAGIASFLALLIF 835          
BLAST of CX289131 vs. ExPASy Swiss-Prot
Match: GLR27_ARATH (Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 3
Query:    3 GFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFF 233
            GF F + SPL  D+S AIL +++  ++Q I NKW        DL+ +    + LSL SFWGLFLI GIA FLAL+ F
Sbjct:  765 GFVFPKKSPLTDDVSRAILNVTQGEEMQHIENKWFKKPNNCPDLNTSLSS-NHLSLSSFWGLFLIAGIASFLALLIF 840          
The following BLAST results are available for this feature:
BLAST of CX289131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GLR34_ARATH3.532e-3450.96Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR35_ARATH4.469e-2946.36Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR32_ARATH3.915e-2542.36Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR33_ARATH1.488e-2465.48Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH3.102e-2238.67Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ1.303e-2042.96Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR36_ARATH2.903e-2057.65Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR37_ARATH2.543e-1636.73Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR28_ARATH1.543e-1351.28Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=... [more]
GLR27_ARATH1.106e-1148.05Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC02009E06SK IF1 Citrus clementina cDNA clone C02009E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289131 ID=CX289131; Name=CX289131; organism=Citrus clementina; type=EST; length=563bp
GGGGATTTGCATTCCAAAGAGACTCTCCTCTGGCAATTGACTTGTCAACT
GCCATTCTTCAACTCTCAGAAAATGGTGACCTGCAAAAAATCCATAATAA
ATGGTTAACATATAATGAATGCTCCATGGACCTCAGCCCAGCTGACGGAG
GTGGCAGCCGACTCTCTCTAAAAAGCTTCTGGGGACTGTTCCTCATTTGT
GGCATTGCATGCTTCCTCGCTCTTATTTTCTTCTTCTGTAGGGTCTGTGG
TCAGTTTCGCAGGTTTGGCTCAGAGGACGAGGAGAGCATCGAGACCGAGG
ACATTGCACATGATACGTCTACATCTGGTAGACGTACACTCCGCTCAACT
AGCTTCAAGGACTTAATTGATTTCATAGATAGAAAAGAGGCCGAAATTAA
GGAAATTCTTAAACGGAGGAATAGTGATAACAAACGGCCTAGCCAGAGCT
CTGATGGGTAGACGAATTCTCCTGCTTAGGTTTTACCCTGCTCCTCTTTG
TTGTTTAGCGTCATGATCAAAATACGAATTCATCTACACTAATATATCTG
CTTCTTTCTTCAA
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