CX289135

Overview
NameCX289135
Unique NameCX289135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289135 vs. ExPASy Swiss-Prot
Match: FA2H_MACFA (Fatty acid 2-hydroxylase OS=Macaca fascicularis GN=FA2H PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.363e-20
Identity = 55/132 (41.67%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   64 KMVVAQEFTVDLNKPLVFQVGHLGEAYQEWVHQPIVSKEGPRFFESDFWEFLTLTVWWAIPVIWLPAV---CWCISMSIRMGQT------LPHVALMV---------LFGIFVWTLLEYTLHRFLFHIKTRS 405
            K+V   +  VD  KPL++QVGHLGE Y EWVHQP+      R F SD  E L+ TVW+++P+IW+P V    W    +   G            AL V         + GIF+W+L+EY +HRFLFH+K  S
Sbjct:  115 KVVDWDKDLVDWQKPLLWQVGHLGEKYDEWVHQPVT--RPIRLFHSDLIEGLSKTVWYSVPIIWVPLVLYLSWSYYRTFAQGNVRLFTSFTTEYALAVPKSMFPGLFMLGIFLWSLIEYLIHRFLFHMKPPS 244          
BLAST of CX289135 vs. ExPASy Swiss-Prot
Match: FA2H_RAT (Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=Fa2h PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.966e-20
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   64 KMVVAQEFTVDLNKPLVFQVGHLGEAYQEWVHQPIVSKEGPRFFESDFWEFLTLTVWWAIPVIWLPAVCWCISMSIRMGQTLPHVALMVLF-------------------GIFVWTLLEYTLHRFLFHIKTRS 405
            K+V   +  VD  KPL++QVGHLGE Y EWVHQP+      R F SD  E  + TVW+++P+IW+P V + +S S     T  ++ L   F                   G+ +WTL+EY +HRFLFH+K  S
Sbjct:  115 KVVDWDKDLVDWQKPLLWQVGHLGEKYDEWVHQPVA--RPIRLFHSDLIEAFSKTVWYSVPIIWVPLVLY-LSWSYYRTLTQDNIRLFASFTRDYSLVVPESVFIGLFVLGMLIWTLVEYLIHRFLFHMKPPS 244          
BLAST of CX289135 vs. ExPASy Swiss-Prot
Match: FA2H_HUMAN (Fatty acid 2-hydroxylase OS=Homo sapiens GN=FA2H PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.766e-20
Identity = 51/132 (38.64%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   64 KMVVAQEFTVDLNKPLVFQVGHLGEAYQEWVHQPIVSKEGPRFFESDFWEFLTLTVWWAIPVIWLPAV---CWCISMSIRMGQTLPHVAL---------------MVLFGIFVWTLLEYTLHRFLFHIKTRS 405
            K+V   +  VD  KPL++QVGHLGE Y EWVHQP+      R F SD  E L+ TVW+++P+IW+P V    W    +   G      +                + + G F+W+L+EY +HRFLFH+K  S
Sbjct:  115 KVVDWDKDLVDWRKPLLWQVGHLGEKYDEWVHQPVT--RPIRLFHSDLIEGLSKTVWYSVPIIWVPLVLYLSWSYYRTFAQGNVRLFTSFTTEYTVAVPKSMFPGLFMLGTFLWSLIEYLIHRFLFHMKPPS 244          
BLAST of CX289135 vs. ExPASy Swiss-Prot
Match: FA2H_MOUSE (Fatty acid 2-hydroxylase OS=Mus musculus GN=Fa2h PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.154e-19
Identity = 51/132 (38.64%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   64 KMVVAQEFTVDLNKPLVFQVGHLGEAYQEWVHQPIVSKEGPRFFESDFWEFLTLTVWWAIPVIWLPAVCWC----------------ISMSIRMGQTLPHVALMVLF--GIFVWTLLEYTLHRFLFHIKTRS 405
            K+V   +  VD  KPL++QVGHLGE Y EWVHQP+      R F SD  E  + TVW+++P+IW+P V +                  S++      +P    + LF  G+  WT +EY +HRFLFH+K  S
Sbjct:  115 KVVDWDKDLVDWQKPLLWQVGHLGEKYDEWVHQPVA--RPIRLFHSDLIEAFSKTVWYSVPIIWVPLVLYLSWSYYRTLTQDNIRLFASLTREYSMMMPESVFIGLFVLGMLFWTFVEYVIHRFLFHMKPPS 244          
BLAST of CX289135 vs. ExPASy Swiss-Prot
Match: SCS7_YEAST (Inositolphosphorylceramide-B C-26 hydroxylase OS=Saccharomyces cerevisiae GN=SCS7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.842e-15
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   58 EDKMVVAQEFT--------VDLNKPLVFQV---GHLGEAYQEWVHQPIVSKEGPRFFESDFWEFLTLTVWWAIPVIWLPAVCWCISMSIRMGQTLPHVALMVLFGIFVWTLLEYTLHRFLFH 390
            E+K+ +A +++        +DLN+PL+ Q+       + Y + +H+P    +G      +F E LT T WW +PV WLP V + + ++++    L     +   G+FVWTL+EY LHRFLFH
Sbjct:  129 EEKLSIATDYSNDYKKHKFLDLNRPLLMQILRSDFKKDFYVDQIHRPRHYGKGSAPLFGNFLEPLTKTAWWVVPVAWLPVVVYHMGVALKNMNQL-FACFLFCVGVFVWTLIEYGLHRFLFH 249          
BLAST of CX289135 vs. ExPASy Swiss-Prot
Match: SCS7_SCHPO (Inositolphosphorylceramide-B C-26 hydroxylase-like protein C19G12.08 OS=Schizosaccharomyces pombe GN=SPAC19G12.08 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   91 VDLNKPLVFQV--GHLG-EAYQEWVHQPIV---SKEGPRFFESDFWEFLTLTVWWAIPVIWLPAVCWCISMSIRMGQTLPHVALMVLFGIFVWTLLEYTLHRFLFHI 393
            +DL KPL+ Q+  G++  + Y + VH+P     S   P F   +F E LT T W+ IP+IW+P V +    +   G          + G+F WTL+EYT+HRFLFH+
Sbjct:  107 LDLKKPLLPQILFGNIKKDVYLDQVHRPRHYRGSGSAPLF--GNFLEPLTKTPWYMIPLIWVPCVTYGFLYACT-GIPFSVAITFFIIGLFTWTLVEYTMHRFLFHL 210          
The following BLAST results are available for this feature:
BLAST of CX289135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FA2H_MACFA1.363e-2041.67Fatty acid 2-hydroxylase OS=Macaca fascicularis GN... [more]
FA2H_RAT3.966e-2039.85Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=F... [more]
FA2H_HUMAN6.766e-2038.64Fatty acid 2-hydroxylase OS=Homo sapiens GN=FA2H P... [more]
FA2H_MOUSE1.154e-1938.64Fatty acid 2-hydroxylase OS=Mus musculus GN=Fa2h P... [more]
SCS7_YEAST3.842e-1534.43Inositolphosphorylceramide-B C-26 hydroxylase OS=S... [more]
SCS7_SCHPO5.741e-1138.32Inositolphosphorylceramide-B C-26 hydroxylase-like... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02009E10SK IF1 Citrus clementina cDNA clone C02009E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289135 ID=CX289135; Name=CX289135; organism=Citrus clementina; type=EST; length=411bp
CACGAGGTATATATCGGGTTCAGATTCAGATCCGACCCGCATTGCTCCTG
TTAGTAAGAAGACAAGATGGTTGTTGCACAGGAGTTCACTGTCGATTTAA
ACAAACCCCTTGTCTTCCAGGTCGGTCATCTTGGAGAAGCTTATCAGGAA
TGGGTTCACCAGCCAATTGTAAGCAAGGAAGGCCCTAGATTTTTCGAAAG
TGATTTTTGGGAGTTCTTGACTCTCACAGTCTGGTGGGCAATTCCGGTCA
TTTGGCTGCCAGCTGTTTGTTGGTGCATCTCAATGTCTATTAGAATGGGC
CAGACACTTCCGCATGTAGCTCTGATGGTGCTTTTTGGCATCTTTGTTTG
GACACTGCTTGAGTATACTTTGCACCGTTTCCTCTTCCATATCAAAACGA
GGAGTTACTGG
back to top