CX289137
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 1.585e-53 Identity = 95/123 (77.24%), Postives = 113/123 (91.87%), Query Frame = 1 Query: 1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369 LA +AM+VC+K+KN+ATA +FAR LL+TNPTIESQ++TARQV+QAAERN TDAT LNYDFRNPFVICG+T+VPIY+GQKDV+CPYCT RFVPSQEG +CSVCDLAV+G DASGLLCS +Q+R Sbjct: 1096 LAYFSAMTVCYKSKNMATAAHFARSLLDTNPTIESQARTARQVMQAAERNMTDATTLNYDFRNPFVICGSTYVPIYKGQKDVACPYCTARFVPSQEGNICSVCDLAVIGADASGLLCSASQVR 1218
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2) HSP 1 Score: 206.453 bits (524), Expect = 6.021e-53 Identity = 96/123 (78.05%), Postives = 113/123 (91.87%), Query Frame = 1 Query: 1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369 LALL+AM VC+K KNLATA NFARRLLET+P ++SQ+K ARQV+QAAERN TD T+LNYDFRNPFV+CG+T+VPIYRGQKDVSCPYCT RFVP+QEG +C+VCDLAV+G DASGLLCSP+Q+R Sbjct: 1095 LALLSAMGVCYKAKNLATASNFARRLLETSP-VDSQAKMARQVVQAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCDLAVIGADASGLLCSPSQVR 1216
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA3_ORYSJ (Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.536e-43 Identity = 85/123 (69.11%), Postives = 100/123 (81.30%), Query Frame = 1 Query: 1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369 L L +AM +C+K KN ATA +FAR LLE NP ESQ+K ARQV Q D+ +LNYD+RNPFV+CGAT+VPIYRGQKDVSCPYC +RFVPS EGQLC++C+LAVVG DASGLLCSPTQ+R Sbjct: 1098 LVLGSAMGLCYKQKNFATAEHFARMLLENNPN-ESQAKRARQVQQQCS-GKKDSCELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQLR 1218
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.644e-42 Identity = 82/123 (66.67%), Postives = 101/123 (82.11%), Query Frame = 1 Query: 1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369 L L +AM +C+K KN ATA +FAR LLE NP E+Q++ ARQV Q D+++LNYD+RNPFV+CGAT+VPIYRGQKDVSCPYC +RFVPS EGQLC++C+LAVVG DASGL+CSPTQ+R Sbjct: 1098 LVLGSAMGLCYKQKNFATAEHFARMLLENNPN-EAQARRARQVQQQCS-GKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLVCSPTQLR 1218
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA1_ORYSJ (Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.147e-42 Identity = 83/123 (67.48%), Postives = 100/123 (81.30%), Query Frame = 1 Query: 1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369 L L +AM +C+K KN ATA +FAR LLE NP E+Q++ ARQV Q D+++LNYD+RNPFV+CGAT+VPIYRGQKDVSCPYC +RFVPS EGQLC++C+LAVVG DASGLLCSPTQ R Sbjct: 1098 LVLGSAMGLCYKQKNFATAEHFARMLLENNPN-EAQARRARQVQQQCS-GKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQSR 1218
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 9.060e-25 Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369 L L A+++ FK KN TA FARRLLE P E +T R++L A E+NPTDA QLNYD NPF IC A++ PIYRG+ CP + P +GQ+C V + +G D GL SP Q R Sbjct: 1103 LVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQT-RKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1224
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 1.183e-24 Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369 L L A+++ FK KN TA FARRLLE P E +T R++L A E+NPTDA QLNYD NPF IC A++ PIYRG+ CP + P +GQ+C V + +G D GL SP Q R Sbjct: 1103 LVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQT-RKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1224
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.545e-24 Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369 L L A+++ FK KN TA FARRLLE P E +T R++L A E+NPTDA QLNYD NPF IC A++ PIYRG+ CP + P +GQ+C V + +G D GL SP Q R Sbjct: 1103 LVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQT-RKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDVIGLRISPLQFR 1224
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA_DICDI (Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.709e-23 Identity = 51/117 (43.59%), Postives = 80/117 (68.38%), Query Frame = 1 Query: 1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPT--DATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGL 345 L+L +AM+ +K K+ A +FARRL+ NP + ++ A++V A++ PT D QLNYD RNPFVIC ++VPIY+G + CPYC++ ++P+ +G++CSVC ++ +G D GL Sbjct: 1099 LSLRSAMNCAYKVKHFNLAASFARRLISLNPNPDLATQ-AKKVFNFAQQTPTPSDIQQLNYDERNPFVICAHSYVPIYKGSPLIKCPYCSSCYLPTHKGKVCSVCQISEIGKDVQGL 1214 The following BLAST results are available for this feature:
BLAST of CX289137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289137 ID=CX289137; Name=CX289137; organism=Citrus clementina; type=EST; length=512bpback to top |