CX289137

Overview
NameCX289137
Unique NameCX289137
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.585e-53
Identity = 95/123 (77.24%), Postives = 113/123 (91.87%), Query Frame = 1
Query:    1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369
            LA  +AM+VC+K+KN+ATA +FAR LL+TNPTIESQ++TARQV+QAAERN TDAT LNYDFRNPFVICG+T+VPIY+GQKDV+CPYCT RFVPSQEG +CSVCDLAV+G DASGLLCS +Q+R
Sbjct: 1096 LAYFSAMTVCYKSKNMATAAHFARSLLDTNPTIESQARTARQVMQAAERNMTDATTLNYDFRNPFVICGSTYVPIYKGQKDVACPYCTARFVPSQEGNICSVCDLAVIGADASGLLCSASQVR 1218          
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 6.021e-53
Identity = 96/123 (78.05%), Postives = 113/123 (91.87%), Query Frame = 1
Query:    1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369
            LALL+AM VC+K KNLATA NFARRLLET+P ++SQ+K ARQV+QAAERN TD T+LNYDFRNPFV+CG+T+VPIYRGQKDVSCPYCT RFVP+QEG +C+VCDLAV+G DASGLLCSP+Q+R
Sbjct: 1095 LALLSAMGVCYKAKNLATASNFARRLLETSP-VDSQAKMARQVVQAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCDLAVIGADASGLLCSPSQVR 1216          
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA3_ORYSJ (Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.536e-43
Identity = 85/123 (69.11%), Postives = 100/123 (81.30%), Query Frame = 1
Query:    1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369
            L L +AM +C+K KN ATA +FAR LLE NP  ESQ+K ARQV Q       D+ +LNYD+RNPFV+CGAT+VPIYRGQKDVSCPYC +RFVPS EGQLC++C+LAVVG DASGLLCSPTQ+R
Sbjct: 1098 LVLGSAMGLCYKQKNFATAEHFARMLLENNPN-ESQAKRARQVQQQCS-GKKDSCELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQLR 1218          
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.644e-42
Identity = 82/123 (66.67%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369
            L L +AM +C+K KN ATA +FAR LLE NP  E+Q++ ARQV Q       D+++LNYD+RNPFV+CGAT+VPIYRGQKDVSCPYC +RFVPS EGQLC++C+LAVVG DASGL+CSPTQ+R
Sbjct: 1098 LVLGSAMGLCYKQKNFATAEHFARMLLENNPN-EAQARRARQVQQQCS-GKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLVCSPTQLR 1218          
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA1_ORYSJ (Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.147e-42
Identity = 83/123 (67.48%), Postives = 100/123 (81.30%), Query Frame = 1
Query:    1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369
            L L +AM +C+K KN ATA +FAR LLE NP  E+Q++ ARQV Q       D+++LNYD+RNPFV+CGAT+VPIYRGQKDVSCPYC +RFVPS EGQLC++C+LAVVG DASGLLCSPTQ R
Sbjct: 1098 LVLGSAMGLCYKQKNFATAEHFARMLLENNPN-EAQARRARQVQQQCS-GKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQSR 1218          
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.060e-25
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369
            L L  A+++ FK KN  TA  FARRLLE  P  E   +T R++L A E+NPTDA QLNYD  NPF IC A++ PIYRG+    CP     + P  +GQ+C V  +  +G D  GL  SP Q R
Sbjct: 1103 LVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQT-RKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1224          
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.183e-24
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369
            L L  A+++ FK KN  TA  FARRLLE  P  E   +T R++L A E+NPTDA QLNYD  NPF IC A++ PIYRG+    CP     + P  +GQ+C V  +  +G D  GL  SP Q R
Sbjct: 1103 LVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQT-RKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1224          
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.545e-24
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 369
            L L  A+++ FK KN  TA  FARRLLE  P  E   +T R++L A E+NPTDA QLNYD  NPF IC A++ PIYRG+    CP     + P  +GQ+C V  +  +G D  GL  SP Q R
Sbjct: 1103 LVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQT-RKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDVIGLRISPLQFR 1224          
BLAST of CX289137 vs. ExPASy Swiss-Prot
Match: COPA_DICDI (Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.709e-23
Identity = 51/117 (43.59%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 LALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPT--DATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGL 345
            L+L +AM+  +K K+   A +FARRL+  NP  +  ++ A++V   A++ PT  D  QLNYD RNPFVIC  ++VPIY+G   + CPYC++ ++P+ +G++CSVC ++ +G D  GL
Sbjct: 1099 LSLRSAMNCAYKVKHFNLAASFARRLISLNPNPDLATQ-AKKVFNFAQQTPTPSDIQQLNYDERNPFVICAHSYVPIYKGSPLIKCPYCSSCYLPTHKGKVCSVCQISEIGKDVQGL 1214          
The following BLAST results are available for this feature:
BLAST of CX289137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
COPA2_ARATH1.585e-5377.24Coatomer subunit alpha-2 OS=Arabidopsis thaliana G... [more]
COPA1_ARATH6.021e-5378.05Coatomer subunit alpha-1 OS=Arabidopsis thaliana G... [more]
COPA3_ORYSJ2.536e-4369.11Coatomer subunit alpha-3 OS=Oryza sativa subsp. ja... [more]
COPA2_ORYSJ1.644e-4266.67Coatomer subunit alpha-2 OS=Oryza sativa subsp. ja... [more]
COPA1_ORYSJ2.147e-4267.48Coatomer subunit alpha-1 OS=Oryza sativa subsp. ja... [more]
COPA_MOUSE9.060e-2547.97Coatomer subunit alpha OS=Mus musculus GN=Copa PE=... [more]
COPA_HUMAN1.183e-2447.97Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=... [more]
COPA_BOVIN1.545e-2447.97Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 ... [more]
COPA_DICDI1.709e-2343.59Coatomer subunit alpha OS=Dictyostelium discoideum... [more]
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Properties
Property NameValue
Genbank descriptionC02009F02SK IF1 Citrus clementina cDNA clone C02009F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289137 ID=CX289137; Name=CX289137; organism=Citrus clementina; type=EST; length=512bp
TTAGCCTTGCTAAATGCAATGTCAGTATGCTTCAAGAATAAGAACCTTGC
TACAGCGGGTAACTTTGCCAGGCGGTTATTGGAGACAAACCCCACGATTG
AGAGCCAATCAAAAACGGCCAGGCAAGTGCTTCAGGCTGCAGAGAGGAAT
CCAACAGATGCCACACAGCTGAATTATGATTTTAGAAACCCATTTGTCAT
TTGTGGAGCAACACATGTGCCAATCTACCGAGGACAGAAGGATGTCTCAT
GCCCCTACTGCACTACCCGGTTTGTGCCTAGCCAAGAAGGGCAGCTCTGC
TCAGTGTGTGATCTTGCGGTTGTTGGGGTAGATGCTTCAGGATTGCTCTG
TTCTCCTACCCAGATTCGATGATCAAACTACTGAATCAGAAAGAATTGTT
CAACCATTTTTCTGCTCATCCTTTTGGCAGCATAAACGATCAAGTTTATT
GATTCTCATATCTGCAGCTAAAAGGTAAGATACCAAAACAAGAGTTAAAA
GTTTCGAATTTA
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