CX289146

Overview
NameCX289146
Unique NameCX289146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289146 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    7 PPGGGKTLLAKAVVG---ANFFSIPASQFVEIYVGFGASRVRSLYQEAKDNVNVISCFFSIEMV 189
            PPG GKTLLAKA+ G     FFSI  S+FVE++VG GASRVR L+++AKDN   I     I+ V
Sbjct:  214 PPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAV 277
[Close]
BLAST of CX289146 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    7 PPGGGKTLLAKAVVG---ANFFSIPASQFVEIYVGFGASRVRSLYQEAKDNVNVISCFFSIEMV 189
            PPG GKTLLAKA+ G     FFSI  S+FVE++VG GASRVR L+++AKDN   I     I+ V
Sbjct:  214 PPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAV 277
The following BLAST results are available for this feature:
BLAST of CX289146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTSH_PORPU7.260e-1156.25Cell division protease ftsH homolog OS=Porphyra pu... [more]
FSTH_PORYE7.260e-1156.25Cell division protease ftsH homolog OS=Porphyra ye... [more]
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Properties
Property NameValue
Genbank descriptionC02009G01SK IF1 Citrus clementina cDNA clone C02009G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289146 ID=CX289146; Name=CX289146; organism=Citrus clementina; type=EST; length=565bp
GGGGCCCCTCCTGGCGGGGGGAAAACACTACTTGCAAAAGCTGTGGTTGG
TGCGAATTTCTTCTCCATTCCTGCCTCTCAGTTTGTGGAAATATATGTTG
GCTTTGGTGCTTCTCGTGTTCGCTCACTTTACCAGGAGGCCAAGGACAAT
GTAAATGTTATTTCTTGCTTCTTTTCCATAGAAATGGTTCTATAAAAAAA
GATCCTTTTGGTCAAGTTCCGTCTGATTTTGAACAATTTAAGTCCATAAC
AAAAATCAACTGTGGCTTTTATGTTGCTTTCAAACTAGAACACATCTTAT
TTTAGAATGACTGTCTTTCTCATACATCGATTGTTCTTCTTCATCTTTTT
GTTTCTCATAAAAATTTGCAAACATCTTGGGGATTCTAACATTTTTATTA
GAAATTTGAAATTATGATCTCCCGGATTTGTTGTTGATCTACGTAGGTCC
CATCAGTTGTATTCATTGATGAGTTGGATGCCGTTGGAAGGGAGCGTGGT
TTAAAGGTTCAGGTGGACAAGAACGTGATGCTACTCTTAATCAAGTTGGT
TGGGACAATATTGAT
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