CX289149

Overview
NameCX289149
Unique NameCX289149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:26..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_ARATH (Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 1.750e-84
Identity = 150/180 (83.33%), Postives = 166/180 (92.22%), Query Frame = 3
Query:   42 TMARSFLQVAAAEE-VAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            TMARSFLQ  + +E VAPPLRVVQIEGL +LKIIKHCKEFSP LVTGQLLGLDVGSVLEVTNCFPFP++++DEEIEADGANYQLEMMRCLREVNVDNNTVGWYQST+LG +QT ELIETF+NYQENI+RCVCIIYDPS+++ G LA KALKLSDSFM+LYR  NFTGEKLREKN SW+DI
Sbjct:    3 TMARSFLQAISKDEAVAPPLRVVQIEGLAVLKIIKHCKEFSPTLVTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMELYRGGNFTGEKLREKNFSWMDI 182          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DICDI (Eukaryotic translation initiation factor 3 subunit H OS=Dictyostelium discoideum GN=eif3h PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 90/162 (55.56%), Postives = 122/162 (75.31%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            L VVQI+GLV+LKIIK CKE+ P LV GQLLGLD+G+ LEV+NCFPFP +++++E     A+YQLEMMR LREVN+D+NTVGWY  T L  F    +IET  NYQ  I ++CV I+YDP +++QG L+ K  +L+ SFM+L++  +F+ E+L + NLS+ DI
Sbjct:   16 LDVVQIDGLVVLKIIKQCKEYLPELVPGQLLGLDIGTSLEVSNCFPFPPRDQEDENSESIADYQLEMMRFLREVNIDSNTVGWYTPTYLNSFFNESVIETQYNYQATINQKCVVIVYDPIKTSQGTLSLKCYRLTQSFMELFKDQSFSRERLDQANLSFNDI 177          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_EMENI (Eukaryotic translation initiation factor 3 subunit H OS=Emericella nidulans GN=AN1270 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.967e-37
Identity = 80/184 (43.48%), Postives = 110/184 (59.78%), Query Frame = 3
Query:   75 AEEVAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            AE+   PL  V++E LV++KIIKHC +  P   TG ++G+DV  VLE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++DPSRS QG+L+ +A +LS  FM  ++ N FT ++L++ NL + DI
Sbjct:    2 AEKEVTPLTAVKVEALVVMKIIKHCSQVFPTTATGSIVGMDVDGVLEITNTFPFPVVEVPPESHFDNAAPNPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDPSRSAQGSLSLRAFRLSPKFMAAFKDNKFTSDELQKSNLKYQDI 185          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_NEMVE (Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis GN=v1g168210 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.027e-36
Identity = 75/158 (47.47%), Postives = 107/158 (67.72%), Query Frame = 3
Query:  102 VVQIEGLVMLKIIKHCKE--FSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            +VQ++GL +LKIIKHC+E   S  LV G LLGL   + LE+TNCFPFP  +  ++ + D  NYQ+E+MR LR VN+D+  VGWYQST LG +    L+++  +YQ++I   V +IYDP R++QG L  KA +LSD  M LY+   F+ +KL +  +S+
Sbjct:   17 IVQVDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDVNYQMEVMRRLRAVNIDHLHVGWYQSTYLGSYINRTLLDSQYSYQKSIEESVVLIYDPLRTSQGMLTLKAFRLSDEMMKLYKDGEFSADKLSKAGISF 174          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPCL (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus clavatus GN=ACLA_025520 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.502e-35
Identity = 77/182 (42.31%), Postives = 108/182 (59.34%), Query Frame = 3
Query:   81 EVAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEAD---------------GANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            E   PL  V++E LV++KIIKHC +  P   TG ++G+DVG  LE+TN FPFP+ E   E   +                A YQ EM+R LREVNVD N VGWY S  +G F    ++E    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++ NL + DI
Sbjct:    3 EKETPLTAVKVEALVVMKIIKHCSQTFPTTATGSIVGMDVGGTLEITNSFPFPVLEVPSESHFENAPTNPAAAAPRAKGNAAYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVVENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSNLRYQDI 184          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPFU (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus fumigatus GN=AFUA_1G09970 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 76/178 (42.70%), Postives = 106/178 (59.55%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            PL  V++E LV++KI+KHC +  P   TG ++G+DVG  LE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++  L + DI
Sbjct:    7 PLTAVKVEALVVMKIMKHCSQTFPTTATGSIVGMDVGGTLEITNSFPFPVVEVPPESHFDNAAANPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDI 184          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPFC (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_009410 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 76/178 (42.70%), Postives = 106/178 (59.55%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            PL  V++E LV++KI+KHC +  P   TG ++G+DVG  LE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++  L + DI
Sbjct:    7 PLTAVKVEALVVMKIMKHCSQTFPTTATGSIVGMDVGGTLEITNSFPFPVVEVPPESHFDNAAANPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDI 184          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_XENLA (Eukaryotic translation initiation factor 3 subunit H OS=Xenopus laevis GN=eif3h PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 72/163 (44.17%), Postives = 111/163 (68.10%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCKE--FSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++++ D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP +++QG+L+ KA +L+   M++ +  +F+ E L++ N+++ D+
Sbjct:   18 VKQVQIDGLVVLKIIKHYQEEGHGSEVVQGVLLGLVVDDRLEITNCFPFP-QHTEDDVDFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESVVLIYDPIKTSQGSLSLKAYRLTPKLMEICKEKDFSAEGLKKANVAYEDM 179          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_XENTR (Eukaryotic translation initiation factor 3 subunit H OS=Xenopus tropicalis GN=eif3h PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.244e-34
Identity = 71/163 (43.56%), Postives = 110/163 (67.48%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCKE--FSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            ++ VQI+G+V+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++++ D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++ D+
Sbjct:   19 VKQVQIDGMVVLKIIKHYQEEGHGSEVVQGVLLGLVVDDRLEITNCFPFP-QHTEDDVDFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESVVLIYDPIKTGQGSLSLKAYRLTPKLMEVCKEKDFSAEGLKKANIAFEDM 180          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_TAEGU (Eukaryotic translation initiation factor 3 subunit H OS=Taeniopygia guttata GN=EIF3H PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.133e-33
Identity = 76/171 (44.44%), Postives = 113/171 (66.08%), Query Frame = 3
Query:   63 QVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            + AAA + A  ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++
Sbjct:   23 KAAAAGDSA--VKQVQIDGLVVLKIIKHYQEEGQGNEVVQGVLLGLVVDDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANIAY 190          
The following BLAST results are available for this feature:
BLAST of CX289149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3H_ARATH1.750e-8483.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DICDI4.214e-4655.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_EMENI7.967e-3743.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEMVE3.027e-3647.47Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPCL1.502e-3542.31Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPFU7.456e-3542.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPFC7.456e-3542.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_XENLA2.833e-3444.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_XENTR8.244e-3443.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_TAEGU3.133e-3344.44Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009G04SK IF1 Citrus clementina cDNA clone C02009G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289149 ID=CX289149; Name=CX289149; organism=Citrus clementina; type=EST; length=578bp
GCACGCGTAGAGAAAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCT
AGGTCTTTTCTACAAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAG
AGTTGTTCAGATTGAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCA
AGGAGTTTTCACCAGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTT
GGTAGCGTGCTTGAAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGA
GGACGAAGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGA
GGTGTCTAAGAGAGGTTAATGTGGACAATAACACTGTTGGATGGTACCAA
TCAACAATGCTAGGATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCT
GAACTACCAGGAGAATATTAGAAGGTGTGTCTGCATAATTTATGACCCTT
CAAGGTCCAATCAAGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGAT
TCCTTTATGGATCTTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAG
GGAGAAAAATTTATCATGGGTGGATATT
back to top