CX289152

Overview
NameCX289152
Unique NameCX289152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig175 contig Ccv1_Contig175:1..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289152 vs. ExPASy Swiss-Prot
Match: TC753_ARATH (Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 3.641e-91
Identity = 156/176 (88.64%), Postives = 169/176 (96.02%), Query Frame = 1
Query:    4 EWSLVPGRGGRPTFASLQPGGTVSFEHRNLQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGN 531
            EWS+VPGRGG PT AS QPGG+V+FEHRNLQGLNRS++GSVTTSNFLNPQDDL+FKLEYVHPYLDGVYNPRNRTF+ SCFNSRKLSPVFTGGPGV+EVP IWVDRAG+KANITENFTRQSKFTYGLVMEEITTRDESSHI+ +GQR+LPSGGISADGPPTTLSGTG+DRMAFLQ N
Sbjct:  458 EWSIVPGRGGAPTLASFQPGGSVTFEHRNLQGLNRSLMGSVTTSNFLNPQDDLSFKLEYVHPYLDGVYNPRNRTFKTSCFNSRKLSPVFTGGPGVEEVPPIWVDRAGVKANITENFTRQSKFTYGLVMEEITTRDESSHIAANGQRLLPSGGISADGPPTTLSGTGVDRMAFLQAN 633          
BLAST of CX289152 vs. ExPASy Swiss-Prot
Match: TOC75_PEA (Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 7.591e-89
Identity = 154/176 (87.50%), Postives = 165/176 (93.75%), Query Frame = 1
Query:    4 EWSLVPGRGGRPTFASLQPGGTVSFEHRNLQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGN 531
            EWS+VPGRGGRPT ASLQPGGT++FEHRNLQGLNRS+ GSVTTSNFLNPQDDLAFK+EY HPYLDGV NPRNRT R SCFNSRKLSPVFTGGPGVDEVP+IWVDRAG+KANITENF+RQSKFTYGLVMEEI TRDES+HI  +GQRVLP+G ISADGPPTTLSGTGIDRMAFLQ N
Sbjct:  449 EWSIVPGRGGRPTLASLQPGGTITFEHRNLQGLNRSLTGSVTTSNFLNPQDDLAFKMEYAHPYLDGVDNPRNRTLRVSCFNSRKLSPVFTGGPGVDEVPSIWVDRAGVKANITENFSRQSKFTYGLVMEEIITRDESNHICSNGQRVLPNGAISADGPPTTLSGTGIDRMAFLQAN 624          
BLAST of CX289152 vs. ExPASy Swiss-Prot
Match: TOC75_ORYSJ (Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 2.706e-78
Identity = 137/177 (77.40%), Postives = 155/177 (87.57%), Query Frame = 1
Query:    4 EWSLVPGRGGRPTFASLQPGGTVSFEHRNLQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNP-RNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGN 531
            EWS+VPGR GRPT AS+QPGGTVSFEHRN+ GLNRSI+GSVT+SN LNPQDDL+FKLEYVHPYLDGV +  +NRTF+ SCFN+RKLSPVF  GP +DE P +WVDR G KANITE+FTRQSKFTYGLV+EEITTRDE++ I  HG R +PSGG+S DGPPTTLSGTGIDRMAFLQ N
Sbjct:  456 EWSIVPGREGRPTLASIQPGGTVSFEHRNIYGLNRSIVGSVTSSNLLNPQDDLSFKLEYVHPYLDGVDDRNKNRTFKTSCFNTRKLSPVFVAGPNMDEAPPVWVDRVGFKANITESFTRQSKFTYGLVVEEITTRDETNSICTHGSRAMPSGGLSMDGPPTTLSGTGIDRMAFLQAN 632          
BLAST of CX289152 vs. ExPASy Swiss-Prot
Match: TC754_ARATH (Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.403e-42
Identity = 92/167 (55.09%), Postives = 116/167 (69.46%), Query Frame = 1
Query:   37 PTFASLQPGGTVSFEHRNLQGLNRSILGSVTTSNFLNPQ-DDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDE-VPAIWVDRAGLKANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGN 531
            P+    +  G  +    N +G N+S++GSVT  N  NP+ DDL  K+EYV  +L+ V  PRNRTF+ S FNSRKLSPVFTGGPG ++ VP ++V R  LKA ITEN TRQ + TYG++ EEI TRDE+  IS +G  + P GGIS +GPPTTLSGTGID +A LQ N
Sbjct:   46 PSLDFFEVTGNCNLGRPNSEGSNQSLMGSVTIRNIFNPKLDDLLSKIEYVR-FLEAVKKPRNRTFKTSFFNSRKLSPVFTGGPGYEDLVPPMFVGRDCLKATITENLTRQRELTYGVMFEEIITRDENRRISENGLLLSPDGGISINGPPTTLSGTGIDHIATLQAN 211          
The following BLAST results are available for this feature:
BLAST of CX289152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TC753_ARATH3.641e-9188.64Protein TOC75-3, chloroplastic OS=Arabidopsis thal... [more]
TOC75_PEA7.591e-8987.50Protein TOC75, chloroplastic OS=Pisum sativum GN=T... [more]
TOC75_ORYSJ2.706e-7877.40Protein TOC75, chloroplastic OS=Oryza sativa subsp... [more]
TC754_ARATH1.403e-4255.09Protein TOC75-4, chloroplastic OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC02009G07SK IF1 Citrus clementina cDNA clone C02009G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289152 ID=CX289152; Name=CX289152; organism=Citrus clementina; type=EST; length=533bp
GCCGAGTGGAGTCTTGTTCCTGGACGTGGTGGGCGGCCCACGTTTGCTTC
ACTTCAGCCTGGTGGAACTGTTTCTTTTGAACACCGGAATCTCCAAGGCT
TGAATAGATCCATTCTCGGTTCAGTGACCACCAGCAACTTCTTAAATCCT
CAGGATGATCTGGCTTTTAAGCTGGAGTATGTGCATCCATACTTGGATGG
TGTTTATAATCCCCGTAACCGGACTTTCCGTGCCAGCTGCTTCAACAGTC
GGAAACTAAGTCCAGTCTTCACTGGTGGCCCAGGAGTGGATGAAGTCCCT
GCTATCTGGGTTGATCGAGCTGGACTAAAGGCTAATATCACAGAGAATTT
CACCCGTCAAAGCAAATTCACATATGGTCTTGTTATGGAAGAGATAACGA
CACGTGATGAAAGCAGCCACATATCTCCACATGGTCAAAGAGTGTTGCCG
AGTGGAGGAATTAGTGCAGATGGACCTCCAACCACCCTCAGTGGTACTGG
AATTGACCGAATGGCATTTCTACAGGGAAACAT
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