CX289153

Overview
NameCX289153
Unique NameCX289153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig696 contig Ccv1_Contig696:310..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289153 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.387e-46
Identity = 91/118 (77.12%), Postives = 104/118 (88.14%), Query Frame = 2
Query:    5 KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 358
            + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   79 RPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CX289153 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.675e-37
Identity = 70/108 (64.81%), Postives = 95/108 (87.96%), Query Frame = 2
Query:   35 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 358
            ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:   90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CX289153 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 2
Query:   35 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 358
            +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  120 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CX289153 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.036e-31
Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 2
Query:    2 PKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 358
            P KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   51 PNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CX289153 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.352e-31
Identity = 67/116 (57.76%), Postives = 83/116 (71.55%), Query Frame = 2
Query:    2 PKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 346
            P KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   46 PNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CX289153 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 58/117 (49.57%), Postives = 69/117 (58.97%), Query Frame = 2
Query:    2 PKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 346
            P  P   T  +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   59 PPTPAAPT-VTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CX289153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA7.387e-4677.12Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL3.675e-3764.81Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU7.929e-3262.73High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.036e-3156.67Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.352e-3157.76Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA5.517e-1749.57Carotene biosynthesis-related protein CBR, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02009G08SK IF1 Citrus clementina cDNA clone C02009G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289153 ID=CX289153; Name=CX289153; organism=Citrus clementina; type=EST; length=468bp
ACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTCGCGTTCA
GCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTC
GTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCA
GTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCA
CGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAA
TCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGAGGTTTGC
TATGCTGGGCCTTGTTGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGGCA
CCCTTGTTTAAGCTTAATTTTGTTTAGATCTGTAGATCTGTATTTTTTTT
AACTAATTAATGTATGAGATCCTACTGTAATTAAATCTCTATTTCTCATG
CAAAAAAAAAAAAAAAAA
back to top