CX289154

Overview
NameCX289154
Unique NameCX289154
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11116 contig Ccv1_Contig11116:1017..1556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC5_PAPSO (Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum GN=TYDC5 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 1.401e-82
Identity = 140/179 (78.21%), Postives = 160/179 (89.39%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            P +L++ I +D+E GL+PLFLCAT+GTT+ TAVDP+ PLC+VAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFF TLDCCCLWVKD  ALV +LST+PEYLKNKAT+S QV+DYKDWQI LSRRFRS+KLW V+R+YGVANLR FLRSHV MAK F+ L++ DKR
Sbjct:  237 PQALLSTILADIESGLVPLFLCATVGTTSSTAVDPIGPLCEVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWFFTTLDCCCLWVKDSNALVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMKLWLVLRSYGVANLRSFLRSHVKMAKHFDGLIAMDKR 415          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC2_PAPSO (Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 1.894e-79
Identity = 136/177 (76.84%), Postives = 153/177 (86.44%), Query Frame = 2
Query:    8 SLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            +L   I  D+E GLIPLF+C T+GTT+ TAVDP+ P+C+VAK++ +WVHVDAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFF TLDCCCLWVKDP ALV +LSTNPEYL+NKATES QVVDYKDWQI LSRRFRSLKLW V+R+YGV NLR+FLRSHV MAK FE L+  D R
Sbjct:  237 TLREVILEDIEAGLIPLFVCPTVGTTSSTAVDPISPICEVAKEYEMWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWFFTTLDCCCLWVKDPSALVKALSTNPEYLRNKATESRQVVDYKDWQIALSRRFRSLKLWMVLRSYGVTNLRNFLRSHVKMAKTFEGLICMDGR 413          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC1_PAPSO (Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 3.230e-79
Identity = 135/179 (75.42%), Postives = 155/179 (86.59%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            P+SL + I +D+E GL+PLFLCAT+GTT+ TAVDP+ PLC VAK  GIWVH+DAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFF TLDCCCLWVKD  +LV +LST+PEYLKNKAT+S QV+DYKDWQI LSRRFRS+KLW V+R+YG+ANLR FLRSHV MAK F+ L+  D R
Sbjct:  237 PNSLQSTILADIESGLVPLFLCATVGTTSSTAVDPIGPLCAVAKLHGIWVHIDAAYAGSACICPEFRHFIDGVEDADSFSLNAHKWFFTTLDCCCLWVKDSDSLVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMKLWLVLRSYGIANLRTFLRSHVKMAKHFQGLIGMDNR 415          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC3_PAPSO (Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferum GN=TYDC3 PE=2 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 7.197e-79
Identity = 133/177 (75.14%), Postives = 153/177 (86.44%), Query Frame = 2
Query:    8 SLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            +L   I  D+E GLIPLF+C T+GTT+ TAVDP+ P+C+VAK++ +WVH+DAAYAGSACICPEFRHFIDGVE ADSFSLNAHKWFF TLDCCCLWVKDP +LV +LSTNPEYL+NKATES QVVDYKDWQI L RRFRS+KLW V+R+YGV NLR+FLRSHV MAK FE LV  D+R
Sbjct:  237 TLREVILEDIEAGLIPLFVCPTVGTTSSTAVDPIGPICEVAKEYEMWVHIDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWFFTTLDCCCLWVKDPSSLVKALSTNPEYLRNKATESRQVVDYKDWQIALIRRFRSMKLWMVLRSYGVTNLRNFLRSHVRMAKTFEGLVGADRR 413          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC4_PETCR (Tyrosine decarboxylase 4 OS=Petroselinum crispum GN=TYRDC-4 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 4.995e-72
Identity = 125/179 (69.83%), Postives = 147/179 (82.12%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            P  L + I  D++ GLIPL+LCAT+GTT+ T VDPL  L +VAK++ +WVHVDAAYAGSACICPEFR ++DGVE ADSFSLNAHKWF  TLDCCCLWV+DP AL+ SLST PE+LKN A+E+ +VVDYKDWQI LSRRFR+LKLWFV+R+YGV  LR F+R HV MAK FE LV  DKR
Sbjct:  234 PKRLESAILYDLQNGLIPLYLCATVGTTSSTTVDPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWFLTTLDCCCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGLDKR 412          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC3_PETCR (Tyrosine decarboxylase 3 OS=Petroselinum crispum GN=TYRDC-3 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 4.995e-72
Identity = 125/179 (69.83%), Postives = 147/179 (82.12%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            P  L + I  D++ GLIPL+LCAT+GTT+ T VDPL  L +VAK++ +WVHVDAAYAGSACICPEFR ++DGVE ADSFSLNAHKWF  TLDCCCLWV+DP AL+ SLST PE+LKN A+E+ +VVDYKDWQI LSRRFR+LKLWFV+R+YGV  LR F+R HV MAK FE LV  DKR
Sbjct:  235 PKRLESAILYDLQNGLIPLYLCATVGTTSSTTVDPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWFLTTLDCCCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGLDKR 413          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC2_PETCR (Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 8.521e-72
Identity = 124/179 (69.27%), Postives = 148/179 (82.68%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            P  L + I  D++ GLIPL+LCAT+GTT+ T VDPL  L +VAK++ +WVHVDAAYAGSACICPEFR ++DGVE ADSFSLNAHKWF  TLDCCCLWV++P AL+ SLST PE+LKN A+E+ +VVDYKDWQI LSRRFR+LKLWFV+R+YGV  LR F+R HV MAK FE LV+ DKR
Sbjct:  233 PKRLESAILHDLQNGLIPLYLCATVGTTSSTTVDPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWFLTTLDCCCLWVRNPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVNMDKR 411          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC1_PETCR (Tyrosine decarboxylase 1 (Fragment) OS=Petroselinum crispum GN=TYRDC-1 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.898e-71
Identity = 124/179 (69.27%), Postives = 146/179 (81.56%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            P  L + I  D++ GLIPL+LCAT+GTT+ T VDPL  L +VAK++ +WVHVDAAYAGSACICPEFR ++DGVE ADSFSLNAHKWF  TLDCCCLWV+DP AL+ SLST PE+LKN A+E+ +VVDYKDWQI LSRRFR+LKLWFV+R+YGV  LR F+R HV MAK FE LV  D R
Sbjct:  210 PKRLESAILYDLQNGLIPLYLCATVGTTSSTTVDPLPALTEVAKKYKLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWFLTTLDCCCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGMDNR 388          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC1_ARATH (Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.245e-63
Identity = 111/177 (62.71%), Postives = 136/177 (76.84%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD 532
            P+SL   ++ D+E GLIP FLCA +GTT+ TAVDPL  L  +A   GIW HVDAAYAGSACICPE+R +IDGVE ADSF++NAHKWF    DC  LWVKD  +L  +LSTNPE+LKNKA+++  VVDYKDWQI L RRFRSLKLW V+R YG   L+ ++R+H+ +AK FE+LVS D
Sbjct:  225 PESLQEAVSRDLEAGLIPFFLCANVGTTSSTAVDPLAALGKIANSNGIWFHVDAAYAGSACICPEYRQYIDGVETADSFNMNAHKWFLTNFDCSLLWVKDQDSLTLALSTNPEFLKNKASQANLVVDYKDWQIPLGRRFRSLKLWMVLRLYGSETLKSYIRNHIKLAKEFEQLVSQD 401          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: TYDC2_ARATH (Probable tyrosine decarboxylase 2 OS=Arabidopsis thaliana GN=At4g28680 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 9.443e-63
Identity = 110/177 (62.15%), Postives = 139/177 (78.53%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD 532
            P+SL   I+ D+  G IP F+CAT+GTT+  AVDPL PL ++AK++GIW+HVDAAYAG+ACICPE+R FIDG+E ADSF++NAHKW FA   C  LWVKD  +L+ +L TNPEYL+ K ++   VV+YKDWQI+LSRRFRSLKLW V+R YG  NLR+F+R HVN+AK FE  V+ D
Sbjct:  277 PESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQD 453          
The following BLAST results are available for this feature:
BLAST of CX289154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
TYDC5_PAPSO1.401e-8278.21Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferu... [more]
TYDC2_PAPSO1.894e-7976.84Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferu... [more]
TYDC1_PAPSO3.230e-7975.42Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferu... [more]
TYDC3_PAPSO7.197e-7975.14Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferu... [more]
TYDC4_PETCR4.995e-7269.83Tyrosine decarboxylase 4 OS=Petroselinum crispum G... [more]
TYDC3_PETCR4.995e-7269.83Tyrosine decarboxylase 3 OS=Petroselinum crispum G... [more]
TYDC2_PETCR8.521e-7269.27Tyrosine decarboxylase 2 OS=Petroselinum crispum G... [more]
TYDC1_PETCR1.898e-7169.27Tyrosine decarboxylase 1 (Fragment) OS=Petroselinu... [more]
TYDC1_ARATH3.245e-6362.71Tyrosine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
TYDC2_ARATH9.443e-6362.15Probable tyrosine decarboxylase 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC02009G09SK IF1 Citrus clementina cDNA clone C02009G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289154 ID=CX289154; Name=CX289154; organism=Citrus clementina; type=EST; length=540bp
GCCAGACTCACTGATGGCACAAATCAACTCGGATGTAGAAGTTGGACTGA
TCCCATTATTTCTATGTGCCACAATCGGGACGACTGCAATAACTGCTGTT
GATCCCTTAAAGCCACTTTGCGACGTAGCAAAACAATTCGGAATATGGGT
CCACGTTGATGCTGCATATGCTGGAAGTGCCTGCATTTGCCCGGAGTTTC
GACATTTTATTGACGGAGTTGAAGGTGCGGATTCGTTTAGTCTCAATGCA
CATAAATGGTTCTTTGCAACATTAGATTGTTGTTGCCTCTGGGTGAAGGA
TCCAAGAGCTCTTGTGAGCTCACTCTCAACAAATCCTGAGTACTTGAAGA
ACAAAGCCACCGAGTCGATGCAAGTGGTGGATTACAAAGATTGGCAAATA
ACTCTGAGTCGAAGATTTCGTTCGCTGAAACTATGGTTTGTGATAAGAAA
CTATGGCGTGGCAAATCTAAGGCACTTCCTTCGCAGCCATGTAAACATGG
CCAAGCTTTTTGAAAGGCTTGTAAGCGGTGATAAGAGGTT
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