CX289162

Overview
NameCX289162
Unique NameCX289162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AYE) GN=clpX PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.670e-37
Identity = 78/162 (48.15%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP-ETKIGTSSVNAVLVDKEA 484
            F GLEK + +R++   IGF A V+    T  L +      L   V+  DLV +GLIPEFIGR P++ +L  L+E+ L+Q+LTEPKNAL RQY+ +F+M NV L F D ALR +AK+A+ +NTGARGLR++LEN+L E M+++P  T +GT  +N  +++ EA
Sbjct:  250 FAGLEKIVQQRQEKGGIGFTADVKNKDETKKLAE------LFRQVEPTDLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEA 405          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=clpX PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.670e-37
Identity = 78/162 (48.15%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP-ETKIGTSSVNAVLVDKEA 484
            F GLEK + +R++   IGF A V+    T  L +      L   V+  DLV +GLIPEFIGR P++ +L  L+E+ L+Q+LTEPKNAL RQY+ +F+M NV L F D ALR +AK+A+ +NTGARGLR++LEN+L E M+++P  T +GT  +N  +++ EA
Sbjct:  250 FAGLEKIVQQRQEKGGIGFTADVKNKDETKKLAE------LFRQVEPTDLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEA 405          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain SDF) GN=clpX PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.670e-37
Identity = 78/162 (48.15%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP-ETKIGTSSVNAVLVDKEA 484
            F GLEK + +R++   IGF A V+    T  L +      L   V+  DLV +GLIPEFIGR P++ +L  L+E+ L+Q+LTEPKNAL RQY+ +F+M NV L F D ALR +AK+A+ +NTGARGLR++LEN+L E M+++P  T +GT  +N  +++ EA
Sbjct:  250 FAGLEKIVQQRQEKGGIGFTADVKNKDETKKLAE------LFRQVEPTDLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEA 405          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain ACICU) GN=clpX PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.670e-37
Identity = 78/162 (48.15%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP-ETKIGTSSVNAVLVDKEA 484
            F GLEK + +R++   IGF A V+    T  L +      L   V+  DLV +GLIPEFIGR P++ +L  L+E+ L+Q+LTEPKNAL RQY+ +F+M NV L F D ALR +AK+A+ +NTGARGLR++LEN+L E M+++P  T +GT  +N  +++ EA
Sbjct:  250 FAGLEKIVQQRQEKGGIGFTADVKNKDETKKLAE------LFRQVEPTDLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEA 405          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ACIB5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AB0057) GN=clpX PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.670e-37
Identity = 78/162 (48.15%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP-ETKIGTSSVNAVLVDKEA 484
            F GLEK + +R++   IGF A V+    T  L +      L   V+  DLV +GLIPEFIGR P++ +L  L+E+ L+Q+LTEPKNAL RQY+ +F+M NV L F D ALR +AK+A+ +NTGARGLR++LEN+L E M+++P  T +GT  +N  +++ EA
Sbjct:  250 FAGLEKIVQQRQEKGGIGFTADVKNKDETKKLAE------LFRQVEPTDLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEA 405          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ACIB3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AB307-0294) GN=clpX PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.670e-37
Identity = 78/162 (48.15%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP-ETKIGTSSVNAVLVDKEA 484
            F GLEK + +R++   IGF A V+    T  L +      L   V+  DLV +GLIPEFIGR P++ +L  L+E+ L+Q+LTEPKNAL RQY+ +F+M NV L F D ALR +AK+A+ +NTGARGLR++LEN+L E M+++P  T +GT  +N  +++ EA
Sbjct:  250 FAGLEKIVQQRQEKGGIGFTADVKNKDETKKLAE------LFRQVEPTDLVKFGLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEA 405          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_AZOBR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Azospirillum brasilense GN=clpX PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.100e-37
Identity = 79/162 (48.77%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GL+K I++R + +SIGFGA VR         D   T  +L  V+  DL+ +GLIPEFIGR P++ +LS L+E  LV++LT+PKNAL +QY+++F M +V+L F+DDALR I+ KA+ + TGARGLR+++E+IL + MF++P    G S V ++LV+KE V
Sbjct:  250 FAGLDKIIAQRGKGTSIGFGADVRG-------PDERSTGDILREVEPEDLLKFGLIPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLEFSDDALRTISHKAIQRKTGARGLRSIMESILLDPMFDLP----GLSGVESILVNKEVV 400          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ACIAD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter sp. (strain ADP1) GN=clpX PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.359e-36
Identity = 80/162 (49.38%), Postives = 107/162 (66.05%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETK-IGTSSVNAVLVDKEA 484
            F GLEK + +R +   IGF A V+    T  L +      L   V+  DLV +GLIPEFIGR P++ +L  L+E  L+Q+LTEPKNAL RQY+ +F M NV L F + ALR IAKKA+ +NTGARGLR+++EN+L E M+++P  K IGT  VN  ++  EA
Sbjct:  251 FAGLEKIVQQRHEKGGIGFNAEVKKKDETKKLAE------LFRQVEPTDLVKFGLIPEFIGRLPVIATLEELDEAALMQILTEPKNALTRQYQSLFQMENVDLVFEESALRAIAKKALERNTGARGLRSIMENVLLETMYDLPSRKDIGTVVVNEAVIRGEA 406          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ROSDO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=clpX PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.775e-36
Identity = 82/182 (45.05%), Postives = 119/182 (65.38%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAPGCGAKILHGDGELE 547
            F GL+K I+ R + S++GFGA VR N   G          +   ++  DL+ +GLIPEF+GR P+L +L  L+ED LV +LT+PKNAL +QY+++F + + +L FTDDAL  IAK+A+ + TGARGLR++LE+IL + MF++P    G  SV  V+V++EAV S  AP     ++H D   E
Sbjct:  250 FAGLDKIIAARGKGSAMGFGADVRGNDDRG-------VGEIFTDLEPEDLLKFGLIPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELTFTDDALSAIAKRAIERKTGARGLRSILEDILLDTMFDLP----GLESVTEVVVNEEAVNSDAAP----LMIHADASKE 416          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_PSYA2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=clpX PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.744e-36
Identity = 79/168 (47.02%), Postives = 109/168 (64.88%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R + + IGF A V +        D+  +S LL+ V+  DL+ +GLIPE IGR P+L +L+ L+ED LVQ+LTEPKNAL +QYK +F M    + FT +AL  IAKKAMA+ TGARGLR+++EN L E M+E+P  K    +   VLVD++ +     P
Sbjct:  264 FAGLDKVIQQRTEKTGIGFNADVSSK------DDSRRSSELLQQVEPEDLIKFGLIPELIGRLPVLAALTELDEDALVQILTEPKNALVKQYKYLFDMEGADITFTKEALDAIAKKAMARKTGARGLRSIVENALLETMYELPSMK----NAKTVLVDEQVINEGKTP 421          
The following BLAST results are available for this feature:
BLAST of CX289162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_ACIBY4.670e-3748.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBT4.670e-3748.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBS4.670e-3748.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBC4.670e-3748.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIB54.670e-3748.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIB34.670e-3748.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AZOBR6.100e-3748.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIAD1.359e-3649.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ROSDO1.775e-3645.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSYA26.744e-3647.02ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009H05SK IF1 Citrus clementina cDNA clone C02009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289162 ID=CX289162; Name=CX289162; organism=Citrus clementina; type=EST; length=579bp
CTTTGTTGGTTTGGAGAAGACAATTTCAGAGAGACGGCAAGATTCTTCTA
TTGGCTTTGGAGCACCAGTCCGTGCAAACATGAGAACTGGTGGATTGACT
GATGCGCTTGTGACGTCATCATTGTTGGAATCAGTAGATAGTGGTGATCT
TGTAGCATATGGCCTCATTCCTGAATTCATTGGACGGTTTCCGATTTTAG
TGAGCTTGTCAGCTTTAAATGAGGATCAACTTGTTCAGGTTCTCACGGAG
CCCAAAAATGCTCTTGGTAGACAGTACAAGAAGATGTTCAGCATGAATAA
TGTCAAACTGCATTTTACTGATGATGCATTGCGATTGATTGCAAAGAAAG
CAATGGCAAAAAACACTGGTGCTCGGGGTCTAAGAGCCTTATTAGAAAAT
ATTCTAACAGAGGCAATGTTTGAGATTCCGGAAACCAAGATTGGAACTTC
AAGTGTAAATGCAGTATTGGTCGACAAGGAGGCCGTTGGATCAGTGGATG
CACCTGGATGTGGTGCAAAAATTCTTCATGGAGATGGTGAATTGGAACGA
GTTCTCCATGAAACAAAGTCAAAGGATTT
back to top