CX289170

Overview
NameCX289170
Unique NameCX289170
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:998..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.896e-46
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNK 275
            GALAT+DRDYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT AIKPILGEYYQFD TPFYKA+WREA+ECLYVEPDEG   KGV+WYRNK
Sbjct:  296 GALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNK 386          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.240e-45
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 278
            GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY+FD TPF KAMWREA+EC+YVEPD+  ++KGVFWY NK+
Sbjct:  292 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVFWYNNKL 383          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.822e-45
Identity = 80/92 (86.96%), Postives = 85/92 (92.39%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 278
            GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAME TKAIKPILG+YYQFDGTP+ KAMWREAKEC+YVEPD   + KGVFWY NK+
Sbjct:  293 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAKECIYVEPDRQGEKKGVFWYNNKL 384          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.739e-43
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 278
            GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP+Y AM+REAKEC+YVEPD     KGV+WY NK+
Sbjct:  292 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYVEPDREGDKKGVYWYNNKL 383          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.997e-31
Identity = 54/88 (61.36%), Postives = 71/88 (80.68%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWY 266
            GAL+T+DRD+G LN V H++T THV HHLFS +PHYHA EA  AI  +LG++Y+ D TP  KAMWREAKEC+++EP++G  +KGV+WY
Sbjct:  285 GALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAKECIFIEPEKGRGSKGVYWY 372          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.255e-20
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 GALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 242
            GAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  315 GALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.255e-20
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 GALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 242
            GAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  315 GALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.181e-15
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY----QFDGTPFY--KAMWREAKECLYVEPDEGD 242
            G L TVDRDYG+ N + H+I  THV HHLF  +PHYH  EATKA KP+LG+YY    +    PF+  K + R  K+  YV  D G+
Sbjct:  278 GGLTTVDRDYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVS-DSGE 361          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L T+DRDYG++N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  302 GGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 354          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L T+DRDYG++N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  344 GGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396          
The following BLAST results are available for this feature:
BLAST of CX289170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FD6E1_SOYBN5.896e-4689.01Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN2.240e-4586.96Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU3.822e-4586.96Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH2.739e-4384.78Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL6.997e-3161.36Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS4.255e-2058.02Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP4.255e-2058.02Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD3E_TOBAC9.181e-1550.00Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_BRANA3.489e-1459.26Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH3.489e-1459.26Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC02010A03SK IF1 Citrus clementina cDNA clone C02010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289170 ID=CX289170; Name=CX289170; organism=Citrus clementina; type=EST; length=433bp
GAGGAGCCCTAGCAACTGTTGATAGAGACTATGGGATCTTGAACAAGGTC
TTCCATAACATTACTGATACTCATGTAGCTCACCATTTGTTTTCAACAAT
GCCACATTATCATGCAATGGAGGCTACGAAGGCAATAAAGCCAATTTTGG
GAGAATATTATCAGTTCGATGGGACTCCATTTTATAAGGCAATGTGGAGG
GAAGCAAAGGAGTGTCTTTACGTTGAACCGGACGAAGGTGACCAGAACAA
AGGTGTCTTCTGGTACAGAAATAAGATTTGAATTTGAGGAAAAGTTGTAG
CAAAAATGCCATATGGGAAGTTTTGTGTTTCTTGTCCGGTAATTTGGCTT
CCCTTTTGTGGTGATTGAGGTTGTTCTGTTACTTTTAATTGAACTTTAAT
TATAGACTTTTAGTTAAAAAAAAAAAAAAAAAA
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