CX289171

Overview
NameCX289171
Unique NameCX289171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR1B_TOBAC (Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.207e-37
Identity = 79/154 (51.30%), Postives = 98/154 (63.64%), Query Frame = 1
Query:   58 LLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            LL L   H S A N  QDYL AHN ARA VGV P++WD  +A Y+  +  +L  +CN   +   +Y E +A  S   +TAA+ V++ +D K  YDH+SNTCA  G  C  YTQVVWRNSVR+GCA+ +CN  G    V CNYDPPGNV GQ PY
Sbjct:   19 LLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHSH-GQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARVKCNNGG--YVVSCNYDPPGNVIGQSPY 168          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR1C_TOBAC (Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.202e-36
Identity = 78/154 (50.65%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   58 LLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            LL L   H   A N  QDYL AHN ARA VGV P++WD ++A Y+  +A +L  +CN   +   +Y E +AW S   LTAA+ V++ ++ K  Y H+SNTCA  G  C  YTQVVWRNSVR+GCA+ +CN  G    V CNYDPPGNV G+ PY
Sbjct:   19 LLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSH-GQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARVQCNNGG--YIVSCNYDPPGNVIGKSPY 168          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR1_SAMNI (Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.569e-36
Identity = 76/160 (47.50%), Postives = 103/160 (64.38%), Query Frame = 1
Query:   40 SPAIFCLLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            S A+ C++AL  +  S A N PQDY+ AHN AR++V VGP++WD  +A ++ ++AQ   G+C    +   +Y E +A+ S  ELT    V + +  +  Y+ N+NTCA  G  C  YTQVVWRNSVR+GCA+ RCN NG   F+ CNY PPGN  GQRPY
Sbjct:   11 SVALVCVVALVMVQYSVAQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHSGDPRYGENLAFGSGFELTGRNAVDMWVAERNDYNPNTNTCA-PGKVCGHYTQVVWRNSVRIGCARVRCN-NGAW-FITCNYSPPGNYAGQRPY 167          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR1A_TOBAC (Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.736e-35
Identity = 77/154 (50.00%), Postives = 98/154 (63.64%), Query Frame = 1
Query:   58 LLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            LL L   H   A N  QDYL AHN ARA VGV P++WD ++A Y+  +A +L  +CN   +   +Y E +A  S   +TAA+ V++ +D K  YDH+SNTCA  G  C  YTQVVWRNSVR+GCA+ +CN  G    V CNYDPPGN  G+ PY
Sbjct:   19 LLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSH-GQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARVQCNNGG--YVVSCNYDPPGNYRGESPY 168          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PRB1_TOBAC (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.052e-35
Identity = 80/158 (50.63%), Postives = 100/158 (63.29%), Query Frame = 1
Query:   49 IFCLLALAT-IHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            + C +  A  IH S A N PQDYL  HN AR  VGVGPM+WD +LA Y+  +A +  G+C    +    Y E +A ++  +L AA  VK+ +D K  YD+NSN+C   G  C  YTQVVWRNSVRLGCA+ R N NG   F+ CNYDPPGN  GQRP+
Sbjct:    8 VACFITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHSH-GPYGENLA-AAFPQLNAAGAVKMWVDEKRFYDYNSNSCV--GGVCGHYTQVVWRNSVRLGCARVRSN-NGWF-FITCNYDPPGNFIGQRPF 159          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR1_ARATH (Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 74/157 (47.13%), Postives = 99/157 (63.06%), Query Frame = 1
Query:   49 IFCLLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            +F  L  A +  S A + PQDYL+ HN+AR +VGVGPM WD ++A Y+  +A++L+GNC    +    Y E +AW S G+L+    V + +  K  Y++ +NTC  NG  C  YTQVVWR SVRLGCAK RCN  GT   + CNYDP GN   ++PY
Sbjct:   12 VFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCRLIHSG-GPYGENLAWGS-GDLSGVSAVNMWVSEKANYNYAANTC--NGV-CGHYTQVVWRKSVRLGCAKVRCNNGGT--IISCNYDPRGNYVNEKPY 161          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR06_SOLLC (Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 77/155 (49.68%), Postives = 94/155 (60.65%), Query Frame = 1
Query:   55 CLLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            CL+ LA  H   A N PQDYL  HN+ARA VGVGPMSWD  LA  +  +A    G+CN      S   E +A    G+ T    V++ +  +P Y++ +N C + G KC  YTQVVWRNSVRLGC + RCN NG   F+ CNYDP GN  GQRPY
Sbjct:   12 CLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPSYNYATNQC-VGGKKCRHYTQVVWRNSVRLGCGRARCN-NGWW-FISCNYDPVGNWIGQRPY 159          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR04_SOLLC (Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.620e-33
Identity = 75/155 (48.39%), Postives = 93/155 (60.00%), Query Frame = 1
Query:   55 CLLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            CL+ LA  H   A N PQDYL  HN+ARA VGVGPMSWD  LA  +  +A    G+CN      S   E +A    G+ T    V++ +  +P Y++ +N C + G  C  YTQVVWRNSVRLGC + RCN NG   F+ CNYDP GN  G+RPY
Sbjct:   12 CLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPDYNYATNQC-VGGKMCGHYTQVVWRNSVRLGCGRARCN-NGWW-FISCNYDPVGNWVGERPY 159          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR13_HORVU (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.747e-30
Identity = 72/165 (43.64%), Postives = 97/165 (58.79%), Query Frame = 1
Query:   40 SPAIFCLLALAT----IHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQG-ELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            +P +  LLALA     ++LS A N PQDY+  HN ARA+VGVG +SW  KL  ++  +A +   +C  + +    Y E I W S G +  A++ V   +  K  YD+ SNTCA  G  C  YTQVVWR S  +GCA+  CN N    F+ CNY+P GN+ GQ+PY
Sbjct:    3 TPKLVILLALAMSAAMVNLSQAQNSPQDYVSPHNAARAAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSG-GPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAA-GKVCGHYTQVVWRASTSIGCARVVCN-NNRGVFITCNYEPRGNIVGQKPY 164          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR1_HORVU (Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.391e-30
Identity = 68/164 (41.46%), Postives = 96/164 (58.54%), Query Frame = 1
Query:   31 PRTSPAIFCLLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQG-ELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            P+ +  +   +A A ++LS A N PQDY+  HN AR++VGVG +SW  KL  ++  +A +   +C  + +    Y E I W S G +  A++ V   +  K  YD+ SNTCA  G  C  YTQVVWR S  +GCA+  CN N    F+ CNY+P GN+ GQ+PY
Sbjct:    4 PKLAILLALAMAAAMVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSG-GPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAA-GKVCGHYTQVVWRASTSIGCARVVCN-NNRGVFITCNYEPRGNIIGQKPY 164          
The following BLAST results are available for this feature:
BLAST of CX289171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PR1B_TOBAC9.207e-3751.30Pathogenesis-related protein 1B OS=Nicotiana tabac... [more]
PR1C_TOBAC1.202e-3650.65Pathogenesis-related protein 1C OS=Nicotiana tabac... [more]
PR1_SAMNI4.569e-3647.50Pathogenesis-related protein PR-1 type OS=Sambucus... [more]
PR1A_TOBAC1.736e-3550.00Pathogenesis-related protein 1A OS=Nicotiana tabac... [more]
PRB1_TOBAC5.052e-3550.63Basic form of pathogenesis-related protein 1 OS=Ni... [more]
PR1_ARATH1.920e-3447.13Pathogenesis-related protein 1 OS=Arabidopsis thal... [more]
PR06_SOLLC1.920e-3449.68Pathogenesis-related leaf protein 6 OS=Solanum lyc... [more]
PR04_SOLLC3.620e-3348.39Pathogenesis-related leaf protein 4 OS=Solanum lyc... [more]
PR13_HORVU3.747e-3043.64Pathogenesis-related protein PRB1-3 OS=Hordeum vul... [more]
PR1_HORVU6.391e-3041.46Pathogenesis-related protein 1 OS=Hordeum vulgare ... [more]

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Properties
Property NameValue
Genbank descriptionC02010A04SK IF1 Citrus clementina cDNA clone C02010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289171 ID=CX289171; Name=CX289171; organism=Citrus clementina; type=EST; length=619bp
AGCGAAATTAAAACAGTAATCACCATAATGCCAAGAACTTCACCAGCAAT
TTTTTGCCTCTTAGCCCTAGCTACAATCCATCTCTCCTCTGCCCACAATA
AACCTCAAGACTACCTCAAAGCTCACAACGAGGCTCGTGCTAGTGTTGGC
GTTGGCCCGATGTCATGGGACTACAAATTGGCGGATTATTCACATAAACA
TGCACAAAAACTTAAGGGTAACTGCAATTCAAAGAAAACTCAAGTTAGCA
AATACAGTGAGACAATTGCATGGAGCAGCCAGGGCGAGCTTACCGCCGCC
GAGTATGTGAAGATCTGTATGGATGGGAAGCCATTATACGACCACAACTC
TAATACTTGTGCTATTAATGGTACGAAATGCGCAGTCTATACTCAAGTTG
TGTGGCGCAATTCTGTGCGTTTAGGTTGTGCTAAAGAGAGGTGCAATAAA
AATGGCACCCACAACTTTGTCATTTGCAACTACGATCCCCCAGGCAACGT
TTTTGGTCAACGTCCTTACTAGTGGATCATAAAGAAACTTTCCTCTATAA
ATGAGACCAGAGGGCTATGCATGAATAAGTCATGCCGGTGGCAGATATCC
GAGAACAATAAATCAAGCT
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