CX289174
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15 Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 3 Query: 414 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTP 581 TPKKAE +K+R +SA+KT V DKKAK TPQKT+ KKG H+ATPHPSK+++KTP Sbjct: 181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTP 236
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13 Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 3 Query: 414 TPKKAESSKKRPVESASKTYVPDKKAKFVTP--QKTEEKKGVSHIATPHPSKKSAKTPANNDQ-TKQQP 611 TPKK E+ KKR E+A KT + DKKAK TP QKT KKG +H+ATPHP+K KTPANND+ T++ P Sbjct: 205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSP 271
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11 Identity = 40/68 (58.82%), Postives = 45/68 (66.18%), Query Frame = 3 Query: 414 TPKKAES-SKKRPVESASKTYVPDKKAKFV-----TPQKTEEKKGVSHIATPHPSKKSAKTPANNDQT 599 TPKK E +KKRP ES SKT V KKAK TPQKTEEKK H ATPHP+KK K+P N +Q+ Sbjct: 199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQS 266
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11 Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 3 Query: 420 KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPH 614 KK + KKRP ESA+KT + KKAK TP+KT+ KK V H+ATPHPSKK KTP N Q P+ Sbjct: 203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKTP--NSTKGQTPN 264
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11 Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3 Query: 414 TPKKAESSKKRPVE-SASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTP---ANNDQTKQQ 608 TPKK E KKR E ++SK +KKAKFVTPQKT+ KK H+ATPHPSK++ K + + +KQQ Sbjct: 190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQ 258 The following BLAST results are available for this feature:
BLAST of CX289174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289174 ID=CX289174; Name=CX289174; organism=Citrus clementina; type=EST; length=615bpback to top |