CX289174

Overview
NameCX289174
Unique NameCX289174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289174_ssr47 microsatellite CX289174_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
CX289174_ssr263 microsatellite CX289174_ssr263:263..274. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig179 contig Ccv1_Contig179:1..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  414 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTP 581
            TPKKAE +K+R  +SA+KT V DKKAK  TPQKT+ KKG  H+ATPHPSK+++KTP
Sbjct:  181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTP 236          
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 3
Query:  414 TPKKAESSKKRPVESASKTYVPDKKAKFVTP--QKTEEKKGVSHIATPHPSKKSAKTPANNDQ-TKQQP 611
            TPKK E+ KKR  E+A KT + DKKAK  TP  QKT  KKG +H+ATPHP+K   KTPANND+ T++ P
Sbjct:  205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSP 271          
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 40/68 (58.82%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  414 TPKKAES-SKKRPVESASKTYVPDKKAKFV-----TPQKTEEKKGVSHIATPHPSKKSAKTPANNDQT 599
            TPKK E  +KKRP ES SKT V  KKAK       TPQKTEEKK   H ATPHP+KK  K+P N +Q+
Sbjct:  199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQS 266          
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  420 KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPH 614
            KK +  KKRP ESA+KT +  KKAK  TP+KT+ KK V H+ATPHPSKK  KTP  N    Q P+
Sbjct:  203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKTP--NSTKGQTPN 264          
BLAST of CX289174 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  414 TPKKAESSKKRPVE-SASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTP---ANNDQTKQQ 608
            TPKK E  KKR  E ++SK    +KKAKFVTPQKT+ KK   H+ATPHPSK++ K     +  + +KQQ
Sbjct:  190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQ 258          
The following BLAST results are available for this feature:
BLAST of CX289174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HDT1_SOLCH4.352e-1566.07Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT2_MAIZE3.119e-1359.42Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT2_ARATH1.310e-1158.82Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
HDT1_SOYBN1.310e-1156.92Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT3_ARATH8.493e-1152.17Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC02010A07SK IF1 Citrus clementina cDNA clone C02010A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289174 ID=CX289174; Name=CX289174; organism=Citrus clementina; type=EST; length=615bp
CGGCACGAGGCTACTTCACTGGATATAAACTTCGAACAGAGGGTACTGAT
GATGATGATAATTCTGACTCTGATGAAGACAAAATGGATATTCGGCTTGT
TAGTAATGGGAAACCCGAGTTACAGGCCAAACCTCTTTCTGAAAAGCCCA
TTGCTGTCGAGCCCAGTGCTTCCACTGCTAAGCAGAATAAGAAGGATGTT
AAACCCAAACTGAAGGCCGATGGTAGTGATTCTGATGACAGTGATTTGAA
CACTTCATCCTCTGATGATGATGAGACCAGTGATGATGAGAATCCAAATC
TCGTTAATCGTGATGGTAGTAGTGATGAGAGTAGTGGAGAGCTTGATGAA
AGCGATGACGACGAAGATGATGAAGGCACTGATGAGAGCGAAAGTGATGA
TGAAGATGAGGAGACCCCAAAGAAGGCTGAATCAAGCAAGAAGAGACCTG
TGGAGTCTGCTTCAAAAACCTATGTTCCTGACAAGAAGGCTAAATTTGTC
ACACCTCAAAAGACAGAGGAGAAGAAAGGGGTCAGTCACATTGCAACTCC
ACACCCCTCAAAGAAGTCTGCTAAGACTCCTGCTAACAATGACCAGACAA
AGCAGCAGCCTCATA
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