CX289179

Overview
NameCX289179
Unique NameCX289179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:607..1191. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EIF3H_ARATH (Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 3.323e-70
Identity = 125/154 (81.17%), Postives = 142/154 (92.21%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 462
            EEIP+KVSNSAL+SAFMTELE DTPV+Q DYDRL  S++PFLE NMEFLI+CMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AGEEPLPEEDPSNPIFK IPEP RLESFLI N+++N+C QINGV GQ+FSRLYLTKALHDN
Sbjct:  184 EEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLHSSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAGEEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVAGQNFSRLYLTKALHDN 337          
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EIF3H_NEMVE (Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis GN=v1g168210 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.340e-29
Identity = 60/153 (39.22%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            +EIP+ + NS+L++  + EL+ +TP    D   L LS+  +LE+N+  L+E +D+L  +  K+  Y RS+ RQQ Q++++LQ+R+ EN++R   GE+PLP+ED S  +FKP+P P RL++ L++ ++  YC  ++  + QSF + +L +AL D
Sbjct:  179 QEIPLVIKNSSLMNVLLCELDENTPTPSAD-QFLTLSTGSYLEKNVRVLMESVDELCQDSNKYHNYQRSVIRQQQQKENYLQRRQQENQSRIQRGEDPLPDEDLSK-MFKPLPVPSRLDNLLLSEQVNTYCQHVHQFSTQSFGKFFLAQALQD 329          
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EIF3H_SALSA (Eukaryotic translation initiation factor 3 subunit H OS=Salmo salar GN=eif3h PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.155e-28
Identity = 62/151 (41.06%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 453
            EE+P+ + NS LI+  M ELE    V  + ++ L LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+  + Q+R+ EN  R+  GE PLPEED S  +FKP   PPR+++ LIA +I NYC  +   T Q+  +L++ +AL
Sbjct:  191 EEVPIVIKNSHLINVLMWELEEKCTVADK-HELLNLSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYSRNLSKQQQQKHQYTQRRQQENAQRQTRGETPLPEEDVSK-MFKPPQPPPRMDTLLIAGQINNYCQNVKEFTSQNLGKLFMAEAL 339          
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EI3HA_DANRE (Eukaryotic translation initiation factor 3 subunit H-A OS=Danio rerio GN=eif3ha PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27
Identity = 61/154 (39.61%), Postives = 101/154 (65.58%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 462
            EE+P+ + NS LI+  M +L+  + +  + ++ L LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+Q + Q+R+ EN  R++ GE PLPEED S  +FK    PPR+++ LIA +I NYC  I   T Q+  +L++ +AL  N
Sbjct:  182 EEVPIFIKNSHLINVLMWDLQEKSTLADK-HELLNLSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYCRNLSKQQQQKQQYQQRRQQENAQRQSRGEPPLPEEDISK-MFKAPQAPPRMDTLLIAGQINNYCQNIKEFTSQNLGKLFMAEALQSN 333          
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EI3HB_DANRE (Eukaryotic translation initiation factor 3 subunit H-B OS=Danio rerio GN=eif3hb PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.751e-27
Identity = 60/151 (39.74%), Postives = 100/151 (66.23%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 453
            EE+P+ + NS LI+  + ELE  +    + ++ L LSSS  LE++++ L++ +DD+S +  K+  Y RSL++QQ Q+  ++Q+R+ EN  R++ GE PLPEED +  +FKP   PPR+++ LIA++I  YC  I   T Q+  +L++ +AL
Sbjct:  180 EEVPIVIKNSHLINVLLWELEEKSTAADK-HELLSLSSSSHLEKSLQMLMDRVDDMSQDIVKYNNYSRSLSKQQQQKHQYVQRRQQENAQRQSRGEPPLPEEDLTK-MFKPPQPPPRMDTLLIASQINTYCQTIKEFTSQNLGKLFMAEAL 328          
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EIF3H_TAEGU (Eukaryotic translation initiation factor 3 subunit H OS=Taeniopygia guttata GN=EIF3H PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 60/153 (39.22%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EE+P+ + NS LI+  + ELE  + V  R ++ L L+SS  L ++++ L++ +D++S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE PLPEED  N +FKP   PPR+ES LIA +I  YC  I     Q+  +L++ +AL D
Sbjct:  195 EEVPIVIKNSYLINVMLWELEKKSAVADR-HELLSLASSNHLGKSLQLLMDRVDEMSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENIQRQSRGEPPLPEED-INKLFKPPQPPPRMESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345          
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EIF3H_XENLA (Eukaryotic translation initiation factor 3 subunit H OS=Xenopus laevis GN=eif3h PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.569e-26
Identity = 59/153 (38.56%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EE+P+ + NS LI+  + EL+   PVT++ ++ L LSSS  LE++++ L++ +D++S +  K+  Y R++ +QQ Q+  + Q+++ EN  R + GE PLPEED  N +FKP   P R++  LIA +I  Y   I G T Q+  +L++ +AL D
Sbjct:  181 EEVPIVIKNSHLINVLVWELDKKAPVTEK-HELLNLSSSNHLEKSLQLLMDRVDEMSQDIVKYNTYQRNVGKQQQQKHQYTQRKQQENLQRLSRGETPLPEED-VNKMFKPPVTPSRMDPLLIAGQINTYIQHIKGFTSQNLGKLFMAEALQD 331          
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EIF3H_HUMAN (Eukaryotic translation initiation factor 3 subunit H OS=Homo sapiens GN=EIF3H PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 59/153 (38.56%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EE+P+ + NS LI+  M ELE  + V  + ++ L L+SS  L +N++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S  +FKP   P R++S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:  199 EEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349          
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EIF3H_CHICK (Eukaryotic translation initiation factor 3 subunit H OS=Gallus gallus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 59/153 (38.56%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EE+P+ + NS LI+  + ELE  + V  R ++ L L+SS  L ++++ L++ +D++S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE PLPEED  N +FKP   P R+ES LIA +I  YC  I     Q+  +L++ +AL D
Sbjct:  195 EEVPIVIKNSYLINVMLWELEKKSAVADR-HELLSLASSNHLGKSLQLLMDRVDEMSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENLQRQSRGEAPLPEED-INKLFKPPQPPARMESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345          
BLAST of CX289179 vs. ExPASy Swiss-Prot
Match: EIF3H_XENTR (Eukaryotic translation initiation factor 3 subunit H OS=Xenopus tropicalis GN=eif3h PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.909e-25
Identity = 59/153 (38.56%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 EEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 459
            EE+P+ + NS LI+    EL+   PVT++ ++ L LSSS  LE++++ L++ +D+LS +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE  LPEED  N +FKP   P R++S LIA +I  Y   I   T Q+  +L++ +A+ D
Sbjct:  182 EEVPIIIKNSHLINVLAWELDKKAPVTEK-HELLNLSSSNHLEKSLQLLMDRVDELSQDIVKYNTYLRNISKQQQQKHQYTQRRQQENLQRQSRGETSLPEED-VNKLFKPPVPPSRMDSLLIAGQINTYIQHIKEFTSQNLGKLFMAEAMQD 332          
The following BLAST results are available for this feature:
BLAST of CX289179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3H_ARATH3.323e-7081.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEMVE6.340e-2939.22Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SALSA9.155e-2841.06Eukaryotic translation initiation factor 3 subunit... [more]
EI3HA_DANRE3.479e-2739.61Eukaryotic translation initiation factor 3 subunit... [more]
EI3HB_DANRE7.751e-2739.74Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_TAEGU2.255e-2639.22Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_XENLA8.569e-2638.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_HUMAN1.462e-2538.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CHICK1.462e-2538.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_XENTR1.909e-2538.56Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02010B01SK IF1 Citrus clementina cDNA clone C02010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289179 ID=CX289179; Name=CX289179; organism=Citrus clementina; type=EST; length=585bp
GAGGAAATTCCTGTTAAAGTCTCAAATTCTGCACTTATTAGTGCCTTTAT
GACTGAGCTGGAACCTGATACTCCAGTCACACAGCGTGATTACGACCGCC
TGCAATTGTCAAGCAGTCCATTCTTGGAGAGGAATATGGAATTTTTGATT
GAATGCATGGATGATTTGTCAGTGGAACAACAAAAGTTCCAATTTTACTA
TCGAAGCCTAACACGTCAGCAAGCTCAGCAGCAATCATGGCTTCAGAAGA
GAAGGGATGAGAATAAGGCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCT
GAGGAGGATCCTTCAAATCCCATCTTTAAGCCAATTCCTGAGCCTCCTCG
ATTGGAAAGTTTTCTAATTGCAAATCGGATTGCCAACTATTGCAACCAAA
TTAATGGGGTTACGGGACAGAGCTTTAGTCGATTATATTTGACGAAAGCT
TTGCATGATAATTGATGTGAAGCTCGATGGCAACTCTCTTATACCTATTT
TGCAGTAGCTGTTTGAAGATGAGATTGTGATTGCAAATGAGGTAAAGGTT
GGTTGTGTAATGTGATTGAAAGCGAAGATTTTGGA
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