CX289180

Overview
NameCX289180
Unique NameCX289180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.441e-66
Identity = 126/190 (66.32%), Postives = 146/190 (76.84%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESD-TKTPEFINXXXXXXXXXXXXXXXMLKHPYVSSDVSGSNLVSGVIPTITPR 567
            DFGLSRLAPVPD+EGI P HVSTVVKGTPGYLDPEYFLTH+LTDKSDVYSLGVV LEL TGMQPI+HGKNIVRE+NIAY+S  + S +D  M S P EC+EKF  LAL+CC++ETDARPSM+EV+RELE IW +MPES   KT +                  ++KH Y S DVSGS+LVSGV P++ PR
Sbjct:  767 DFGLSRLAPVPDMEGISPQHVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLLELFTGMQPITHGKNIVREINIAYESGSILSTVDKRMSSVPDECLEKFATLALRCCREETDARPSMAEVVRELEIIWELMPESHVAKTADL---SETMTHPSSSSNSSIMKHHYTSMDVSGSDLVSGVAPSVAPR 953          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.942e-48
Identity = 97/190 (51.05%), Postives = 135/190 (71.05%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPEFINXXXXXXXXXXXXXXXMLKHPYVS-SDVSGSNLVSGVIPTITPR 567
            DFG+S+L  + D  G+   HV+T+VKGTPGY+DPEY+L+H+LT+KSDVYSLG+VFLE+LTGM+PISHG+NIVREVN A  + MM SVID +MG Y  ECV++F++LA++CCQD  +ARP M E++RELE+I+ ++P+ +   P                     +  Y + S+ + + LVSGVIP+I PR
Sbjct:  773 DFGISKLIAL-DGGGVQRDHVTTIVKGTPGYVDPEYYLSHRLTEKSDVYSLGIVFLEILTGMRPISHGRNIVREVNEACDAGMMMSVIDRSMGQYSEECVKRFMELAIRCCQDNPEARPWMLEIVRELENIYGLIPKEE--KPYSSPSVQSSASGMSGFAVASPRSSYTTFSEFTANQLVSGVIPSIAPR 959          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.486e-26
Identity = 70/155 (45.16%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREV--------NIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM---PESDTKTPE 432
            DFGLS+L   P+      AHV+T VKGT GYLDPEY++T++LT+KSDVY  GVV LELLTG  PI  G  +V+EV        N+     ++ + I  N G+      EK++ +AL+C + E   RP+MSEV++ELESI  ++   P +D+ T E
Sbjct:  776 DFGLSKLVGDPE-----KAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSPIDRGSYVVKEVKKKMDKSRNLYDLQELLDTTIIQNSGNLKG--FEKYVDVALQCVEPEGVNRPTMSEVVQELESILRLVGLNPNADSATYE 923          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 58/133 (43.61%), Postives = 82/133 (61.65%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTG---MQPISHGKNIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR   V +      +HVST V GTPGYLDPEY+ T++LT+KSDVYS G+V LE++T    ++  +  ++I   V      S + +++D N+ G Y S  V K +KLA+ C      ARP MS V++EL+
Sbjct:  716 DFGLSRSFSVGE-----ESHVSTGVVGTPGYLDPEYYRTYRLTEKSDVYSFGIVLLEIITNQPVLEQANENRHIAERVRTMLTRSDISTIVDPNLIGEYDSGSVRKALKLAMSCVDPSPVARPDMSHVVQELK 843          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 52/135 (38.52%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPI-----SHGKNIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLS++ P  D+     +HV T V GTPGY+DPEY+ T KL +KSDVYS G+V LEL+TG + I         N+V  V    +   +  V+D  + G + S    KF+++A+ C +D    RP+ ++++ +L+
Sbjct:  722 DFGLSKVFPEDDL-----SHVVTAVMGTPGYVDPEYYNTFKLNEKSDVYSFGIVLLELITGKRSIMKTDDGEKMNVVHYVEPFLKMGDIDGVVDPRLHGDFSSNSAWKFVEVAMSCVRDRGTNRPNTNQIVSDLK 851          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK---NIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMREL 384
            DFGLSR  P   IEG    HVSTVV GTPGYLDPEY+ T+ L +KSDVYS G+V LE++T    I+  +   +I   V +      + +++D  + G Y S  V + ++LA+ C    +  RP+MS+V+ EL
Sbjct:  735 DFGLSRSFP---IEG--ETHVSTVVAGTPGYLDPEYYRTNWLNEKSDVYSFGIVLLEIITNQLVINQSREKPHIAEWVGLMLTKGDIQNIMDPKLYGDYDSGSVWRAVELAMSCLNPSSARRPTMSQVVIEL 861          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: PAM74_ARATH (Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK---NIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR  P+         H+STVV GTPGYLDPEY+ T +L +KSDVYS G+V LE++T    I   +   +I + V        +  ++D N+ G Y S  V + ++LA+ C    +  RP+MS+V  EL+
Sbjct:  722 DFGLSRSFPIGG-----ETHISTVVAGTPGYLDPEYYQTTRLGEKSDVYSFGIVLLEIITNQPVIDQSRSKSHISQWVGFELTRGDITKIMDPNLNGDYESRSVWRVLELAMSCANPSSVNRPNMSQVANELK 849          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 58/136 (42.65%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIA------YQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLS+  P  D       HVSTVVKG+ GYLDPEYF   +LT+KSDVYS GVV  E L   +P  +      +V++A      Y+  M+  ++D  + G    EC +KF + A+KC  D+   RPSM +V+  LE
Sbjct:  679 DFGLSKTGPTLD-----HTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCA-RPALNPTLAKEQVSLAEWAPYCYKKGMLDQIVDPYLKGKITPECFKKFAETAMKCVLDQGIERPSMGDVLWNLE 808          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5188_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 59/134 (44.03%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMF-----SVIDGN-MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMREL 384
            DFGLSR  PV        +HVSTVV GTPGYLDPEY+ T+ L++KSDVYS GVV LE++T  QP++        +N  +  SM+      S++D   MG Y +    K ++LAL C    ++ RP+M+ V+ EL
Sbjct:  708 DFGLSRSFPVDG-----ESHVSTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTN-QPVTDKTRERTHIN-EWVGSMLTKGDIKSILDPKLMGDYDTNGAWKIVELALACVNPSSNRRPTMAHVVTEL 834          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELL----TGMQPI-SHGKNIVREVNIAYQSSMMFSVIDGNMGS-YPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR+ P    +     HVSTVVKGT GYLDPEY+    LT+KSDVYS GVV LE+L      MQ +     +++R V   Y+   +  +ID ++ +   S  +EKF ++A++C QD    RP M++V+  LE
Sbjct:  664 DFGLSRVGPTSASQ----THVSTVVKGTFGYLDPEYYRRQVLTEKSDVYSFGVVLLEVLCCRPIRMQSVPPEQADLIRWVKSNYRRGTVDQIIDSDLSADITSTSLEKFCEIAVRCVQDRGMERPPMNDVVWALE 794          
The following BLAST results are available for this feature:
BLAST of CX289180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
Y1684_ARATH1.441e-6666.32Probable LRR receptor-like serine/threonine-protei... [more]
Y5374_ARATH3.942e-4851.05Probable LRR receptor-like serine/threonine-protei... [more]
Y5977_ARATH2.486e-2645.16Probable leucine-rich repeat receptor-like protein... [more]
Y5169_ARATH4.852e-2243.61Probable LRR receptor-like serine/threonine-protei... [more]
Y4291_ARATH1.726e-1938.52Probable LRR receptor-like serine/threonine-protei... [more]
RLK6_ARATH2.254e-1943.18Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
PAM74_ARATH2.254e-1940.60Probable LRR receptor-like serine/threonine-protei... [more]
FERON_ARATH2.254e-1942.65Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]
Y5188_ARATH2.944e-1944.03Probable LRR receptor-like serine/threonine-protei... [more]
Y5900_ARATH3.845e-1942.96Putative receptor-like protein kinase At5g39000 OS... [more]

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Properties
Property NameValue
Genbank descriptionC02010B02SK IF1 Citrus clementina cDNA clone C02010B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289180 ID=CX289180; Name=CX289180; organism=Citrus clementina; type=EST; length=617bp
GATTTTGGACTTTCACGACTTGCACCGGTTCCTGATATTGAAGGAATTGT
ACCAGCTCATGTATCCACAGTTGTCAAGGGGACTCCGGGTTATCTTGATC
CAGAGTACTTCTTAACTCATAAATTGACCGACAAGAGTGATGTGTATAGC
CTTGGAGTGGTATTTTTGGAACTCTTGACTGGTATGCAGCCAATCTCCCA
TGGCAAAAACATTGTTCGAGAGGTAAATATTGCGTATCAATCTAGTATGA
TGTTCTCAGTGATTGATGGGAATATGGGTTCTTATCCTTCGGAATGTGTG
GAGAAATTCATTAAACTGGCCTTGAAATGTTGTCAAGATGAGACAGATGC
AAGACCTTCAATGTCGGAGGTTATGAGAGAACTCGAGAGCATATGGAATA
TGATGCCGGAGTCTGATACAAAAACTCCTGAATTCATAAATAGTGAACAC
ACATCAAAGGAAGAAACTCCACCGTCTTCATCCTCAATGCTGAAGCACCC
ATATGTTTCATCAGATGTCTCTGGTAGCAATCTTGTTAGTGGAGTCATCC
CTACCATTACACCTAGATAAAATCCGAACTGAGAAAATTTTTTATTACTA
CTTTTGAGCAGGCAATG
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