CX289183

Overview
NameCX289183
Unique NameCX289183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3_CAEEL (Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis elegans GN=nst-1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.155e-33
Identity = 72/175 (41.14%), Postives = 110/175 (62.86%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDA-SIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPSE-----ARIVSELGKEFNVNEVYKNESSFIGSLKSVDD 508
            NVG  PG+T+ +QEV+LDKN++L+D PGV+++   + D   +AL+N  R++ L DP+ PV  IL RC    ++  Y L  F+SVD FL ++A   GKL++G   DV AAA+ +L+DWN GK+ YYT PP  +QG   E     A +VS+  KEF+++ + + ++  +  L    D
Sbjct:  286 NVGNLPGITKEIQEVELDKNIRLIDSPGVILVSQKDLDPIEVALKNAIRVDNLLDPIAPVHAILRRCSKETIMLHYNLADFNSVDQFLAQLARRIGKLRRGARPDVNAAAKRVLNDWNTGKLRYYTHPP--EQGTAKEDIVVPAEVVSQFSKEFDIDAIAEEQNQIVEGLPMESD 458          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3_DICDI (Guanine nucleotide-binding protein-like 3 homolog OS=Dictyostelium discoideum GN=gnl3 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.277e-32
Identity = 72/175 (41.14%), Postives = 108/175 (61.71%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNE-----VYKNESSFIGSLKSVDDFQ 514
            VGATPG T+  QEV LDKNVKLLD PG+V +K G  D +I LRN  ++EK+ DP+ PV  IL+RC    ++ +Y++  + S  DFL +VA  R K+ KGGI D+ + A  ++ DW  GKIP+YT PP     +  ++ ++S+   E N+++        N+++   SLK ++  Q
Sbjct:  291 VGATPGFTKFAQEVHLDKNVKLLDSPGIVPIK-GNVDENIILRNVVKLEKVLDPIAPVDAILSRCSQKQILDIYEIAQYQSTTDFLTQVAAKRKKIVKGGIADLRSTAISVIRDWTGGKIPFYTQPPK----VLVKSTLLSQFSDELNIDQSDLISTVSNQNTSFASLKYLEPKQ 460          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3_DROME (Guanine nucleotide-binding protein-like 3 homolog OS=Drosophila melanogaster GN=ns1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.255e-29
Identity = 64/162 (39.51%), Postives = 96/162 (59.26%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQG--IPSEARIVSELGKEFNVNEVYKNESSFI 484
            VG+TPG+T+SMQEV+LD  +KL+DCPG+V    GEN  ++ L+N +R+  + DP    + +L R       ++Y + ++D+ ++F  K A   GK  K G+ DV AAAR +L+DWN GKI Y T PP   +G  +   A IV    +EF+V      E+  +
Sbjct:  295 VGSTPGVTKSMQEVELDSKIKLIDCPGIVFTSGGENSHAV-LKNAQRVGDVKDPFTIAESVLKRASKEYFCTMYDITNYDTFEEFFAKKAARMGKFLKKGVPDVVAAARSVLNDWNTGKIKYCTQPPEVQEGQSVHISASIVHSEAREFDVENFESMETEIL 455          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3L_BOVIN (Guanine nucleotide-binding protein-like 3-like protein OS=Bos taurus GN=GNL3L PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 67/154 (43.51%), Postives = 94/154 (61.04%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPS--EARIVSELGKEFNVNE 457
            +VGA PG+T+ MQEV LDK ++LLD PG+V      ++    LRNC  ++KL DPV PV+ IL RC    + S Y +  F + + FL  VA   GK KKGGI   E AA+ +L DW  GKI +YT+PP+    +P+   A IV E+ + F++ +
Sbjct:  272 SVGAVPGVTKFMQEVYLDKFIRLLDAPGIV--PGPNSEVGTILRNCIHVQKLADPVTPVETILQRCNLEEISSYYGVSGFQTTEHFLTAVAHRLGKKKKGGIYSQEQAAKAVLADWVSGKISFYTLPPS-THTLPTHLSAEIVKEMTEVFDIED 422          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3L_MOUSE (Guanine nucleotide-binding protein-like 3-like protein OS=Mus musculus GN=Gnl3l PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.237e-27
Identity = 68/162 (41.98%), Postives = 97/162 (59.88%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPS--EARIVSELGKEFNVNEV-YKNESS 478
            +VGA PG+T+ MQEV LDK ++LLD PG+V      ++    LRNC  ++KL DPV PV+ IL RC    + S Y +  F + + FL  VA   GK KKGG+   E AA+ +L DW  GKI +YT+PP     +P+   A IV E+ + F++ +  + NE +
Sbjct:  273 SVGAVPGVTKFMQEVYLDKFIRLLDAPGIV--PGPNSEVGTILRNCIHVQKLADPVTPVETILQRCNLEEISSYYGVSGFQTTEHFLTAVAHRLGKKKKGGVYSQEQAAKAVLADWVSGKISFYTLPPP-THTLPTHLSAEIVKEMTEVFDIEDTEHANEDT 431          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3L_HUMAN (Guanine nucleotide-binding protein-like 3-like protein OS=Homo sapiens GN=GNL3L PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.047e-26
Identity = 65/154 (42.21%), Postives = 92/154 (59.74%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPS--EARIVSELGKEFNVNE 457
            +VGA PG+T+ MQEV LDK ++LLD PG+V      ++    LRNC  ++KL DPV PV+ IL RC    + + Y +  F + + FL  VA   GK KKGG+   E AA+ +L DW  GKI +Y  PPA    +P+   A IV E+ + F++ +
Sbjct:  279 SVGAVPGITKFMQEVYLDKFIRLLDAPGIV--PGPNSEVGTILRNCVHVQKLADPVTPVETILQRCNLEEISNYYGVSGFQTTEHFLTAVAHRLGKKKKGGLYSQEQAAKAVLADWVSGKISFYIPPPA-THTLPTHLSAEIVKEMTEVFDIED 429          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3_DANRE (Guanine nucleotide-binding protein-like 3 OS=Danio rerio GN=gnl3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.014e-21
Identity = 61/167 (36.53%), Postives = 92/167 (55.09%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPS--EARIVSELGKEFNVNEVYKNESSFIGSLK 496
            N G   GLTR MQEV + K VK++D PG++   S    A +ALR+ +  EK + P   V+ +L +C    ++  Y +P + S  +FL   A   G L+KGG+ D E AA   L+DW   K+ YY+  P R QG+PS     IV+EL  + +++ V K   +   S++
Sbjct:  288 NAGVQRGLTRCMQEVHITKKVKMIDSPGILAALSNPGSA-MALRSLQVEEKEESPQEAVRNLLKQCNQQHVMLQYNVPDYRSSLEFLTTFAMKHGLLQKGGVADTELAATTFLNDWTGAKLSYYSRVPER-QGLPSYLSDAIVTELQSDVDMDAVKKGNENVKRSVR 452          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GRN1_SCHPO (GTPase grn1 OS=Schizosaccharomyces pombe GN=grn1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.115e-19
Identity = 57/166 (34.34%), Postives = 93/166 (56.02%), Query Frame = 2
Query:    8 GATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDA--SIALRNCKRIEKLDDPVGP---VKEILNRCPANL--LISLYKLP------SFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPSE---ARIVSELGKEFNVNE 457
            G   G+T S++EV+LD  ++L+D PG+V   S   D    + + N     K+DDPV     + + L+R P  L  +   Y+LP        D+  DFL  +A  RG+L +GGI ++ AAA I+++DW+ G+I ++  P   ++   SE    +IV+E  KEF++N+
Sbjct:  304 GNVAGMTTSLREVKLDNKLRLVDSPGIVFPSSDSKDDLYRLVMLNAVSSTKVDDPVAVASYILQFLSRVPGQLERMFQRYELPPLLNTSDIDTATDFLVNIARKRGRLGRGGIPNLNAAANIVINDWHAGRIEWWAEPEVINEKNSSEVQDTQIVTEWAKEFDLND 469          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_HUMAN (Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.763e-19
Identity = 44/128 (34.38%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 385
            NV    G T+  Q + L + + L+DCPGVV   S +++  I L+   ++EK+  P   +  +L R     +   YK+ S+++ +DFL+K+A   GKL KGG  D++   +++L+DW  G+IP++  PP
Sbjct:  337 NVAPIAGETKVWQYITLMRRIFLIDCPGVVY-PSEDSETDIVLKGVVQVEKIKSPEDHIGAVLERAKPEYISKTYKIDSWENAEDFLEKLAFRTGKLLKGGEPDLQTVGKMVLNDWQRGRIPFFVKPP 463          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_MOUSE (Nucleolar GTP-binding protein 2 OS=Mus musculus GN=Gnl2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.608e-19
Identity = 46/140 (32.86%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPSEARI 421
            NV    G T+  Q + L + + L+DCPGVV   S +++  I L+   ++EK+  P   +  +L R     +   YK+ S+++ +DFL+K+A   GKL KGG  D+   ++++L+DW  G+IP++  PP  +  IP+++++
Sbjct:  337 NVAPIAGETKVWQYITLMRRIFLIDCPGVVY-PSEDSETDIVLKGVVQVEKIKAPQDHIGAVLERAKPEYISKTYKIESWENAEDFLEKLALRTGKLLKGGEPDMLTVSKMVLNDWQRGRIPFFVKPPNAE--IPTDSQL 473          
The following BLAST results are available for this feature:
BLAST of CX289183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GNL3_CAEEL1.155e-3341.14Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3_DICDI1.277e-3241.14Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3_DROME2.255e-2939.51Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3L_BOVIN7.253e-2843.51Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3L_MOUSE1.237e-2741.98Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3L_HUMAN1.047e-2642.21Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3_DANRE1.014e-2136.53Guanine nucleotide-binding protein-like 3 OS=Danio... [more]
GRN1_SCHPO2.115e-1934.34GTPase grn1 OS=Schizosaccharomyces pombe GN=grn1 P... [more]
NOG2_HUMAN2.763e-1934.38Nucleolar GTP-binding protein 2 OS=Homo sapiens GN... [more]
NOG2_MOUSE3.608e-1932.86Nucleolar GTP-binding protein 2 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC02010B06SK IF1 Citrus clementina cDNA clone C02010B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289183 ID=CX289183; Name=CX289183; organism=Citrus clementina; type=EST; length=526bp
AAATGTTGGGGCTACTCCTGGGTTAACCAGGTCAATGCAGGAAGTTCAGT
TAGACAAGAATGTTAAATTGTTGGACTGCCCTGGTGTTGTAATGCTTAAA
TCTGGAGAAAATGATGCATCTATAGCTCTTAGAAACTGCAAAAGGATTGA
AAAATTAGATGATCCTGTTGGTCCTGTGAAGGAAATTCTCAACCGTTGCC
CTGCCAATCTGTTGATATCACTATACAAGCTCCCCAGCTTTGATTCAGTT
GATGACTTCCTGCAGAAGGTGGCTACTGTCAGGGGTAAGCTTAAAAAGGG
TGGTATTGTGGATGTTGAAGCTGCTGCAAGGATTATTCTGCACGACTGGA
ATGAGGGTAAAATTCCATATTACACTATGCCTCCGGCTAGGGATCAAGGA
ATTCCTTCAGAGGCAAGGATAGTTTCAGAGTTAGGAAAGGAATTTAATGT
TAATGAGGTTTATAAGAACGAATCTTCATTCATTGGAAGCCTCAAGTCTG
TTGACGACTTTCAACCTGTTGAAGTT
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