CX289184

Overview
NameCX289184
Unique NameCX289184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14297 contig Ccv1_Contig14297:312..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.727e-41
Identity = 87/190 (45.79%), Postives = 119/190 (62.63%), Query Frame = 2
Query:   29 LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTK---STTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHSQMTENKLFGVSLGGDNGDRVEAVAVCHMDTSHWSRDHASFRVLGIEPGSSHVCHFFQADNIVY 589
            LPR +ADSIPFS K+LP +L  F     S  A  M  T+  CE+P  +GE K CATSLES++DFV  +FG  +     ST  L+K   S+++ Q+YT+  V +     +++ACH   YPYA+F CH      + +  SL G +G  VEAVAVCH DTS W+ +HA+F VLG++PG+  VCHF Q D +V+
Sbjct:  393 LPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFGA-SDVDAASTVVLSKAVESSSLAQDYTVSGVRRMAGTGQLIACHPESYPYAVFMCHLTEATTRAYKASLVGKDGTAVEAVAVCHTDTSDWNPEHAAFHVLGVKPGTVPVCHFMQPDAVVW 581          
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 83/189 (43.92%), Postives = 114/189 (60.32%), Query Frame = 2
Query:   29 LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTKS-TTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHSQMTE-NKLFGVSLGGDNGDRVEAVAVCHMDTSHWSRDHASFRVLGIEPGSSHVCHFFQADNIVY 589
            LPR EAD++PFS K L  +L  F     S  A  ++ T+  CE+P  +GE K CATSLESM+DFV  + G     +  ST  + K   T  Q YT+    +     +++ACH   YPYA+F CH  +TE  + +  SL G +G  VEAVAVCH DT+ W+  HA+F+VLG++PG+  VCHF Q D +V+
Sbjct:  135 LPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFVASSLGTRD-IKAASTFLVGKDGDTPAQEYTVTGARRMAETGQLIACHPESYPYAVFMCH--LTEATRAYKASLVGKDGAAVEAVAVCHTDTAEWNPKHAAFQVLGVKPGTVPVCHFVQPDVVVW 320          
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.043e-36
Identity = 80/190 (42.11%), Postives = 112/190 (58.95%), Query Frame = 2
Query:   29 LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTKSTTIFQNYTILQVPKPMFA---PKMVACHIMPYPYAIFYCHSQMTENKLFGVSLGGDNGDRVEAVAVCHMDTSHWSRDHASFRVLGIEPGSSHVCHFFQADNIVY 589
            LPR EAD++PFS +++P +L  FS    S  A  M  T+  CE PP +GE K CATSLESM+DF   T  L T     ++  + K  +  Q YT+  V +        ++VACH  PY YA+F CH      + + VS+ G +G  VEAVAVCH DT+ W+  H +F+VL ++PG+  VCHF   D++V+
Sbjct:  239 LPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDF--ATSSLGTSHVRAASTVVGKEGSPEQEYTVTAVKRAAAGGDQDQLVACHAEPYAYAVFACHLTRA-TRAYAVSMAGRDGTGVEAVAVCHADTAGWNPKHVAFQVLKVKPGTVPVCHFLPQDHVVW 425          
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.677e-33
Identity = 78/198 (39.39%), Postives = 110/198 (55.56%), Query Frame = 2
Query:    8 PSAYPQAL---PREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTKSTTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHSQMTENKLFGVSLGGDNG-DRVEAVAVCHMDTSHWSRDHASFRVLGIEPGSSHVCHFFQADNIVY 589
            P A P AL   PR+ ADS+PF+   LP +L  F  + DS    +ME T+  CE P I GE+K CATSLE++++   G  G      V ST  L ++    Q YT++ V      P  VACH   YPY ++ CH+    ++ + V + G  G D V   AVCH DTS W+ +H SF++LG +PG + VCH     +I++
Sbjct:  159 PPATPAALGFLPRQVADSVPFTTAALPGILATFGIASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVERAMGVLGTRDIRPVTST--LPRAGAPLQTYTVVAVQPVEGGPVFVACHDEAYPYTVYRCHT-TGPSRAYTVDMEGARGADAVTIAAVCHTDTSLWNPEHVSFKLLGTKPGGTPVCHLMPYGHIIW 353          
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 75/188 (39.89%), Postives = 110/188 (58.51%), Query Frame = 2
Query:   29 LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTKSTTIFQNYTILQVP-KPMFAPKMVACHIMPYPYAIFYCHSQMTENKLFGVSLGGDNGDRVEAVAVCHMDTSHWSRDHASFRVLGIEPGSSHVCHFFQADNIVY 589
            LPR EA+++PF  ++    L+ FS    S  A+ M+ T+  CE   + GE K CATSLESM+DF     G +   + +ST+   K+  + Q Y I     K +   K V CH   YP+A+FYCH  M    ++ V L G+NG R +AVAVCH +TS W+ +H +F+VL ++PG+  VCHF    ++V+
Sbjct:  205 LPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLG-KYHVRAVSTEVAKKNAPM-QKYKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKAMMTT-VYAVPLEGENGMRAKAVAVCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389          
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 76/199 (38.19%), Postives = 103/199 (51.76%), Query Frame = 2
Query:    2 RDPSAYPQAL---PREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTKSTTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHSQMTENKLFGVSLGGDNGDRVEAVAVCHMDTSHWSRDHASFRVLGIEPGSSHVCHFFQADNIVY 589
            R P A P AL   PR+ ADS+PF+   LP +L  F  + DS    +ME T+  CE P I GE+K CATSLE++++      G      V ST  L ++    Q YT+  V      P  VACH   YPY ++ CH+            G   GD V    VCH DTS W+ +H SF++LG +PG + VCH     +I++
Sbjct:  184 RFPPATPAALGFLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTST--LPRAGAPLQTYTVRSVRPVEGGPVFVACHDEAYPYTVYRCHTTGPSRAYMVDMEGARGGDAVTIATVCHTDTSLWNPEHVSFKLLGTKPGGTPVCHLMPYGHIIW 380          
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.960e-30
Identity = 76/189 (40.21%), Postives = 106/189 (56.08%), Query Frame = 2
Query:   29 LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTKSTTIFQNYTILQV-PKPMFAPKMVACHIMPYPYAIFYCHSQMTENKLFGVSLGGDNGDRVEAVAVCHMDTSHWSRDHASFRVLGIEPGSSHVCHFFQADNIVYI 592
            LPR  ADS+PF+ ++LP +L   S    SP A AM  T+  CE  P  GE K CATSLESM++F   + G       +ST+      T  Q Y +  V P P+    MVACH M Y YA+F CH+  T    + V+L G +G + EA+A CH D +   R   +++ LG+ PGS  VCHF   D+++++
Sbjct:   54 LPRGRADSVPFASEKLPEILSQLSVPAGSPAADAMRSTLAECEAAPQAGEAKRCATSLESMVEFAASSLGTR-DVHAVSTEVDRAGPTPRQAYRVEAVRPVPVSGGDMVACHGMAYAYAVFGCHT--TTAAAYTVTLAGADGTKAEALAACHTDAA--PRVAEAYKRLGVAPGSVPVCHFLPQDDMLWV 237          
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.506e-29
Identity = 73/193 (37.82%), Postives = 101/193 (52.33%), Query Frame = 2
Query:   29 LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTKSTTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCH------SQMTENKLFGVSLGGDNGDRVEAVAVCHMDTSHWSRDHASFRVLGIEPGSSHVCHFFQADNIVY 589
            LPR  ADSIPF+   LP +L  F  + D+  A  M  T+  CE P + GE+K CATSLE++++      G      + ST  L +     Q Y +  V  P+     VACH   YPY ++ CH      + M E +  G   GGD G+ V    VCH +TS W+ +H SF++LG +PG S VCH     +IV+
Sbjct:  217 LPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALAST--LPRGGAPLQAYAVRAV-LPVEGAGFVACHDQAYPYTVYRCHTTGPARAYMVEMEGDG---GGDGGEAVTVATVCHTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVW 403          
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: BURP2_ORYSJ (BURP domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=BURP2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 73/195 (37.44%), Postives = 99/195 (50.77%), Query Frame = 2
Query:   29 LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGET-----KICATSLESMLDFVHGTFGLETKFQVLSTKFLTKSTTIFQNYTILQV-PKPMFAPKMVACHIMPYPYAIFYCHSQMTENKLFGVSLGGDNGDRVEAVAVCHMDT-SHWSRDHASFRVLGIEPGSSHVCHFFQADNIVYI 592
            LPR  ADS+PF+ ++LP +L   S    SP A AM  T+  CE   I  ET       CATSLESM++ V  + G      V +        T  Q Y +  V P P+    MVACH MPY YA+F  H    +   + V+L G +G   EAVA CH D   H      +++ LG+ PG   VCHF   D+++++
Sbjct:   93 LPRGRADSVPFASEKLPEILSQLSIPAGSPTADAMRSTLAVCEAARIASETAPKHKHYCATSLESMVELVASSLGTRDVHAVSTEVVNRAGPTPRQAYRVEAVRPVPVPGGDMVACHRMPYAYAVFGVHG--IKGAAYTVTLAGADGTMAEAVAACHGDVDGHGVAVAEAYKRLGVAPGKVAVCHFLPQDDMLWV 285          
BLAST of CX289184 vs. ExPASy Swiss-Prot
Match: BURP9_ORYSJ (BURP domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=BURP9 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.578e-23
Identity = 65/196 (33.16%), Postives = 100/196 (51.02%), Query Frame = 2
Query:   29 LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCE-VPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTKSTTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHSQMTENKLFGVSL-GGDNGDRV--EAVAVCHMDTSHWSRDHASFRVLGIEPGSSHVCHFFQADNIVYIPAPT 604
            L R  +  IPFS+K +  +L  FS    + +A  +  T+  CE    + GE   CATS+ES+LD V  + G  TK     T            Y +        +  M+ACH M YPY +F+CH+   + +L+ VSL  G++G  +    +AVCH +TS W   H  F  + ++PG +  CHFF   +I+++P P+
Sbjct:  318 LHRNNSKHIPFSMKNITDILTMFS-PVSATMADGIAATLQACEHTGMVHGEKAKCATSIESLLDVVVSSLG--TKLVRALTPGAPMEGVPSLRYIVASATPVPNSQSMLACHDMLYPYKVFFCHTPK-QTRLYQVSLVSGESGRPLIDGLLAVCHQNTSDWDTGHPFFHFMDVKPGETTACHFFGRGSIIWVPVPS 509          
The following BLAST results are available for this feature:
BLAST of CX289184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
BURPH_ORYSJ3.727e-4145.79BURP domain-containing protein 17 OS=Oryza sativa ... [more]
BURP5_ORYSJ6.158e-3643.92BURP domain-containing protein 5 OS=Oryza sativa s... [more]
BURP3_ORYSJ8.043e-3642.11BURP domain-containing protein 3 OS=Oryza sativa s... [more]
RAF1B_WHEAT1.677e-3339.39Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
RD22_ARATH3.163e-3239.89Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
RAF1A_WHEAT3.163e-3238.19Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURP6_ORYSJ2.960e-3040.21BURP domain-containing protein 6 OS=Oryza sativa s... [more]
BURPD_ORYSJ2.506e-2937.82BURP domain-containing protein 13 OS=Oryza sativa ... [more]
BURP2_ORYSJ1.681e-2537.44BURP domain-containing protein 2 OS=Oryza sativa s... [more]
BURP9_ORYSJ4.578e-2333.16BURP domain-containing protein 9 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC02010B07SK IF1 Citrus clementina cDNA clone C02010B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289184 ID=CX289184; Name=CX289184; organism=Citrus clementina; type=EST; length=629bp
GAGAGATCCCTCAGCTTATCCTCAGGCTTTGCCTAGAGAAGAAGCAGATT
CCATTCCATTTTCATTGAAACAACTGCCTTACCTTCTTCAATTCTTCTCG
TTCTCAGATGACTCACCCCTAGCAAAAGCCATGGAAGGGACCATGAATCA
TTGCGAAGTTCCTCCCATCGAAGGAGAAACCAAAATTTGTGCTACCTCTT
TGGAATCCATGCTTGATTTTGTACACGGAACTTTCGGATTGGAGACCAAA
TTCCAAGTTCTAAGCACAAAATTTCTCACAAAATCAACTACCATTTTCCA
AAATTACACTATTTTACAAGTGCCTAAACCAATGTTTGCTCCCAAGATGG
TGGCATGTCATATCATGCCTTACCCTTATGCAATCTTCTACTGCCACAGC
CAAATGACTGAGAACAAGTTATTCGGTGTTTCATTAGGTGGTGATAATGG
AGATAGAGTGGAAGCTGTAGCAGTTTGCCACATGGATACGTCTCATTGGA
GTCGAGATCATGCATCGTTTCGTGTGCTTGGGATCGAGCCAGGGAGCTCC
CACGTCTGCCATTTCTTCCAGGCTGATAATATTGTATACATTCCAGCACC
TACCTACCATGATTAAAAATGTATTGGTA
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