CX289194

Overview
NameCX289194
Unique NameCX289194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: YIPC_SCHPO (Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe GN=SPAC343.04c PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.854e-32
Identity = 76/205 (37.07%), Postives = 121/205 (59.02%), Query Frame = 2
Query:   20 LPPMIMIPERRLEHLVEQALVLQREACMFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKH--KLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDG 628
            + P I++P+RRLEHL++QA   Q  + ++HN   ++ S  +D++    ++P++   +   H+DEVW + +SHNG+YLAS+S D++AII++V     V LK   +L GH   V+ + WS DD+ LL+C  +++V  WD  +G  L  Y K G  +  C W PD     +G+ D  I  W L G+ L  W+    + I D+ +TSDG
Sbjct:  153 ISPEILLPKRRLEHLLQQAKDYQVSSQVYHNVL-KNFSFLSDYKADPSELPTKEYHVFHDHSDEVWQISYSHNGRYLASASKDKTAIIFDV-----VNLKRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILWDAFTGEKLRDY-KHGFSVSCCCWLPDGLSFITGSPDCHITHWSLNGEILYKWE---DVNIYDMALTSDG 347          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR26_DANRE (WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 78/201 (38.81%), Postives = 111/201 (55.22%), Query Frame = 2
Query:   11 QKLLPPMIMIPERRLEHLVEQALVLQREACMFHN----SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN-GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA--VRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQR 589
            Q  LPP +M+P RRL+ L+ QA+ LQR+ C++HN    SS   +SL  DH C R Q P  T QIL  H +EVWF +FS++G  LA+ S D + IIW+V+ +   + L   L GH   VS ++WS DD  L+ CG ++   +  W+V +G     + +     L S  W+PD K   +G         +L G  LE W+G R
Sbjct:  199 QTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDSSLDSVSLLLDHVCSRKQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVEPDTHQLKLLRTLEGHAYGVSYLAWSPDDVYLIACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLESWEGVR 399          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR26_MOUSE (WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.202e-31
Identity = 80/214 (37.38%), Postives = 118/214 (55.14%), Query Frame = 2
Query:   11 QKLLPPMIMIPERRLEHLVEQALVLQREACMFHNSS-DRDM---SLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGG-VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA--VRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDG 628
            Q  LPP +M+P RRL+ L+ QA+ LQR+ C++HN+  D ++   SL  DH C R Q P  T QIL  H +EVWF +FS++G  LA+ S D + IIW+VD +   + L   L GH   VS ++WS DD  L+ CG ++   +  W+V +G     + +     L S  W+PD K   +G         +L G  L+ W+G   +++  L   SDG
Sbjct:  267 QTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDSYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEG---VRVQCLWCLSDG 477          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR26_HUMAN (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.202e-31
Identity = 80/214 (37.38%), Postives = 118/214 (55.14%), Query Frame = 2
Query:   11 QKLLPPMIMIPERRLEHLVEQALVLQREACMFHNSS-DRDM---SLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGG-VTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA--VRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDG 628
            Q  LPP +M+P RRL+ L+ QA+ LQR+ C++HN+  D ++   SL  DH C R Q P  T QIL  H +EVWF +FS++G  LA+ S D + IIW+VD +   + L   L GH   VS ++WS DD  L+ CG ++   +  W+V +G     + +     L S  W+PD K   +G         +L G  L+ W+G   +++  L   SDG
Sbjct:  287 QTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEG---VRVQCLWCLSDG 497          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR26_XENTR (WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 79/214 (36.92%), Postives = 118/214 (55.14%), Query Frame = 2
Query:   11 QKLLPPMIMIPERRLEHLVEQALVLQREACMFHNSS-DRDM---SLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLN-GGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEA--VRRWDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDG 628
            Q  LPP +M+P RRL+ L+ QA+ LQR+ C++HN+  D ++   SL  DH C R Q P  T Q+L  H +EVWF +FS++G  LA+ S D + IIW+VD +   + L   L GH   VS ++WS DD  L+ CG ++   +  W+V +G     + +     L S  W+PD K   +G         +L G  L+ W+G   +++  L   SDG
Sbjct:  240 QTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRKQFPCFTQQVLTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHQLKLLKTLEGHAYGVSYLAWSPDDNYLIACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEG---VRVQCLWCLSDG 450          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR26_DROME (WD repeat-containing protein 26 homolog OS=Drosophila melanogaster GN=CG7611 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.854e-26
Identity = 74/208 (35.58%), Postives = 114/208 (54.81%), Query Frame = 2
Query:   11 QKLLPPMIMIPERRLEHLVEQALVLQREACMFHN----SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHK--LSGH-QKPVSCVSWSSDDQQLLTCGVEEA--VRRWDVSSGNCLHVYEKAGLGLVSCG-WHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKIS 604
            Q  +PP +M+  RRL  L++QA+ LQ + C  H+    ++   +SL TDH C  D  P +T+QIL  H DEVWF +FS +G  LA+ S D + IIW+VD    +TLKH+  L G  Q  VS VSWS D + +L  G E++  +  W+V  G  +  + ++    ++CG +  D      G     + + +L G  ++ W+G R   I+
Sbjct:  246 QTFMPPSVMMSPRRLRTLLQQAVELQSQHCPCHDMAWETNLETVSLLTDHCCTTDGFPMQTIQILTDHCDEVWFCKFSPDGLKLATGSKDSTVIIWDVD-PYKLTLKHRRVLDGQAQLSVSFVSWSPDSKLILVGGTEDSHELYIWNVDDGKLVVKFSQSLEDSLACGAFSRDGARFVCGGQKGQLYLCDLNGTIVDSWEGVRVNSIA 452          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 46/123 (37.40%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  191 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHK--LSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 553
            L GHT+ V  ++FS NG++LASSS DR  IIW     G    K++  L GH   +S V+WSSD  +L++   ++ ++ WDV SG CL   +     +  C ++P    I SG+ D+++ +WE+
Sbjct:   37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIW-----GAYDGKYEKTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEV 154          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR5B_PONAB (WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  191 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHK--LSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 553
            L GHT+ V  ++FS NG++LASSS DR  IIW     G    K++  L GH   +S V+WSSD  +L++   ++ ++ WD+ SG CL   +     +  C ++P    I SG+ D+++ +WE+
Sbjct:   37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIW-----GAYDGKYERTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEV 154          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 47/129 (36.43%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  170 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 553
            P+ TL+  L GHT  V  ++FS NG++LASSS D+   IW    +G    +  +SGH+  +S V+WSSD   L++   ++ ++ WDVSSG CL   +     +  C ++P    I SG+ D+S+ +W++
Sbjct:   33 PNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.588e-15
Identity = 44/121 (36.36%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  191 LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 553
            L GHT  V  ++FS NG++LASSS D+   IW    +G    +  +SGH+  +S V+WSSD   L++   ++ ++ WDVSSG CL   +     +  C ++P    I SG+ D+S+ +W++
Sbjct:   41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158          
The following BLAST results are available for this feature:
BLAST of CX289194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
YIPC_SCHPO1.854e-3237.07Uncharacterized WD repeat-containing protein C343.... [more]
WDR26_DANRE9.202e-3238.81WD repeat-containing protein 26 OS=Danio rerio GN=... [more]
WDR26_MOUSE1.202e-3137.38WD repeat-containing protein 26 OS=Mus musculus GN... [more]
WDR26_HUMAN1.202e-3137.38WD repeat-containing protein 26 OS=Homo sapiens GN... [more]
WDR26_XENTR2.050e-3136.92WD repeat-containing protein 26 OS=Xenopus tropica... [more]
WDR26_DROME9.854e-2635.58WD repeat-containing protein 26 homolog OS=Drosoph... [more]
WDR5B_HUMAN4.150e-1637.40WD repeat-containing protein 5B OS=Homo sapiens GN... [more]
WDR5B_PONAB9.245e-1636.59WD repeat-containing protein 5B OS=Pongo abelii PE... [more]
WDR5_XENTR1.577e-1536.43WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT4.588e-1536.36WD repeat-containing protein 5 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC02010C05SK IF1 Citrus clementina cDNA clone C02010C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289194 ID=CX289194; Name=CX289194; organism=Citrus clementina; type=EST; length=630bp
GGCTGCAGGGCAGAAACTGCTTCCCCCAATGATTATGATACCTGAAAGAA
GGTTGGAACATTTAGTTGAACAGGCCCTTGTCTTGCAACGAGAGGCTTGC
ATGTTTCACAATTCCTCGGACAGGGATATGTCATTGTACACTGATCATCA
GTGTGGAAGAGATCAAATTCCTTCTCGAACATTGCAGATATTACAAGGTC
ACACTGATGAAGTTTGGTTCTTGCAATTTTCACACAATGGGAAATATTTA
GCTTCATCATCCAACGACCGATCAGCAATCATTTGGGAGGTTGATCTTAA
TGGTGGAGTGACATTAAAGCATAAATTATCTGGTCACCAGAAGCCAGTTT
CCTGTGTTTCATGGAGCTCTGATGACCAACAGCTCCTCACTTGTGGAGTA
GAGGAGGCTGTTAGGCGCTGGGATGTGTCTTCTGGCAATTGTCTCCATGT
TTATGAAAAAGCGGGCCTTGGCCTGGTGTCTTGTGGATGGCATCCAGACA
GAAAATGGATATTTTCTGGTGCCAATGATAAGAGTATCTGCATGTGGGAA
CTAGGTGGAAAAGAGCTAGAGTGTTGGAAAGGCCAACGAACTTTAAAGAT
TTCTGATTTGGAAGTAACGAGTGATGGGAA
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