CX289195

Overview
NameCX289195
Unique NameCX289195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289195 vs. ExPASy Swiss-Prot
Match: DGDG2_SOYBN (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Glycine max GN=DGD2 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 2.469e-74
Identity = 127/161 (78.88%), Postives = 148/161 (91.93%), Query Frame = 3
Query:    6 LQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 488
            +QAFLLKY N+W+V IYCHKVIRLSAATQ+Y  SIICNVHGVNPKFLEIGKKK+EQQQ G HAF KGAY+IGKM+WSKGYKELL+LL DH+KEL+ LEVDL+G+GED +++Q+AAEKL++ VRV+P RDHAD +FHDYK+FLNPSTTDVVCTTTAEALAMG
Sbjct:  164 MQAFLLKYLNNWVVSIYCHKVIRLSAATQDYTGSIICNVHGVNPKFLEIGKKKREQQQKGEHAFTKGAYFIGKMIWSKGYKELLQLLKDHEKELSALEVDLFGSGEDSDEVQKAAEKLELAVRVHPARDHADALFHDYKLFLNPSTTDVVCTTTAEALAMG 324          
BLAST of CX289195 vs. ExPASy Swiss-Prot
Match: DGDG2_LOTJA (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.037e-72
Identity = 125/162 (77.16%), Postives = 148/162 (91.36%), Query Frame = 3
Query:    3 RLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 488
            ++QAFLLKY N+W+V IYCHKVIRLSAATQ+Y+ SI+CNVHGVNPKFLEIGKKK+EQQQNG  AF KGAY+IGKMVWSKGYKELL L  +HQKEL+ LEVDL+G+GED +++Q+AA+KL++ VRV+P RDHAD +FHDYK+FLNPSTTDVVCTTTAEALAMG
Sbjct:  163 QMQAFLLKYLNNWVVGIYCHKVIRLSAATQDYSGSIVCNVHGVNPKFLEIGKKKREQQQNGDQAFTKGAYFIGKMVWSKGYKELLHLFKNHQKELSALEVDLFGSGEDSDEVQKAAKKLEMAVRVHPARDHADALFHDYKLFLNPSTTDVVCTTTAEALAMG 324          
BLAST of CX289195 vs. ExPASy Swiss-Prot
Match: DGDG2_ARATH (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DGD2 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 8.219e-70
Identity = 126/162 (77.78%), Postives = 140/162 (86.42%), Query Frame = 3
Query:    3 RLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 488
            R++AF LKY NSW+V IYCHKVIRLSAATQEY  SI+CNVHGVNPKFLEIG +K EQQ+     F KGAYYIGKMVWSKGYKELL+LL+ HQKELA LEVDLYG+GED  +I+EAA KL + V VYPGRDHAD +FH+YKVFLNPSTTDVVCTTTAEALAMG
Sbjct:  165 RVKAFFLKYLNSWVVGIYCHKVIRLSAATQEYPKSIVCNVHGVNPKFLEIGLRKLEQQKLQEQPFTKGAYYIGKMVWSKGYKELLKLLEKHQKELAELEVDLYGDGEDSEEIKEAARKLDLTVNVYPGRDHADSLFHNYKVFLNPSTTDVVCTTTAEALAMG 326          
BLAST of CX289195 vs. ExPASy Swiss-Prot
Match: DGDG1_SOYBN (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.664e-54
Identity = 96/161 (59.63%), Postives = 127/161 (78.88%), Query Frame = 3
Query:    6 LQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 488
            LQAFL+K+ N+W+   YCHKV+RLSAATQ+   S+ICNVHGVNPKFL+IG+K   +++ G  AF KGAY++GKMVW+KGYKEL++LL  H+ +L G ++D++GNGED N++Q AA +L + +    GRDHAD   H YKVF+NPS +DV+CT TAEALAMG
Sbjct:  470 LQAFLVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKIAAERELGQKAFTKGAYFLGKMVWAKGYKELIDLLAKHKADLDGFKLDVFGNGEDANEVQSAARRLDLNLNFQKGRDHADDSLHRYKVFINPSISDVLCTATAEALAMG 630          
BLAST of CX289195 vs. ExPASy Swiss-Prot
Match: DGDG1_LOTJA (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 5.918e-52
Identity = 91/161 (56.52%), Postives = 124/161 (77.02%), Query Frame = 3
Query:    6 LQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 488
            LQAFL+K+ N+W+   YC KV+RLSAATQ+   S++CNVHGVNPKFL+IG+    +++ G   F KGAY++GKMVW+KGYKEL++LL  H+ +L G+++D++GNGED N++Q AA +  + +    GRDHAD   H YKVF+NPS +DV+CT TAEALAMG
Sbjct:  473 LQAFLVKHINNWVARAYCDKVLRLSAATQDLPKSVVCNVHGVNPKFLKIGESIAAERELGQKGFTKGAYFLGKMVWAKGYKELIDLLAKHKADLDGVKLDVFGNGEDANEVQSAARRFDLNLNFQKGRDHADDSLHRYKVFINPSISDVLCTATAEALAMG 633          
BLAST of CX289195 vs. ExPASy Swiss-Prot
Match: DGDG1_ARATH (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DGD1 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.009e-51
Identity = 91/161 (56.52%), Postives = 121/161 (75.16%), Query Frame = 3
Query:    6 LQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 488
            LQAF + + N+W+   YC KV+RLSAATQ+   S++CNVHGVNPKFL IG+K  E++  G  AF+KGAY++GKMVW+KGY+EL++L+  H+ EL    +D+YGNGED  ++Q AA+K  + +    GRDHAD   H YKVF+NPS +DV+CT TAEALAMG
Sbjct:  503 LQAFFVNHVNNWVTRAYCDKVLRLSAATQDLPKSVVCNVHGVNPKFLMIGEKIAEERSRGEQAFSKGAYFLGKMVWAKGYRELIDLMAKHKSELGSFNLDVYGNGEDAVEVQRAAKKHDLNLNFLKGRDHADDALHKYKVFINPSISDVLCTATAEALAMG 663          
The following BLAST results are available for this feature:
BLAST of CX289195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DGDG2_SOYBN2.469e-7478.88Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_LOTJA1.037e-7277.16Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_ARATH8.219e-7077.78Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG1_SOYBN1.664e-5459.63Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_LOTJA5.918e-5256.52Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_ARATH1.009e-5156.52Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC02010C07SK IF1 Citrus clementina cDNA clone C02010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289195 ID=CX289195; Name=CX289195; organism=Citrus clementina; type=EST; length=490bp
GACGATTACAAGCTTTTCTTCTTAAATATGCAAATAGCTGGCTTGTTGAT
ATCTATTGCCACAAGGTAATTAGGTTGTCTGCTGCCACACAGGAATATGC
TAATTCCATTATCTGCAATGTTCATGGAGTCAATCCTAAATTCCTTGAAA
TTGGCAAGAAAAAGAAGGAGCAGCAACAAAATGGGACCCATGCTTTTGCA
AAGGGTGCCTACTACATTGGGAAGATGGTGTGGAGTAAAGGCTATAAGGA
GCTGCTTGAACTTCTTGATGACCATCAAAAGGAGCTAGCAGGGCTTGAAG
TGGATTTATATGGCAATGGGGAGGACTTCAATCAAATTCAAGAAGCTGCT
GAAAAGTTAAAAATAGTAGTTAGAGTTTACCCTGGACGTGATCATGCTGA
CCTCATATTCCATGATTATAAAGTGTTCCTGAATCCAAGCACAACAGACG
TTGTTTGCACAACCACAGCCGAAGCATTGGCCATGGGAAA
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