CX289198

Overview
NameCX289198
Unique NameCX289198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7555 contig Ccv1_Contig7555:591..1173. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289198 vs. ExPASy Swiss-Prot
Match: MTPC4_ARATH (Metal tolerance protein C4 OS=Arabidopsis thaliana GN=MTPC4 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 8.880e-92
Identity = 167/193 (86.53%), Postives = 180/193 (93.26%), Query Frame = 1
Query:    4 MLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLVVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHD 582
            ++AEVVHSVADFANQ LLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNG+Q+LWT+  P NM+ AA+VI GSF+IEGASL+VAIQ+VKKGAA EGMTIRDYIWRGHDPTSVAVMTEDGAAV GL IA ASL+AV +TGN IYDPIGSI+VGNLLGMVAIFLIQRNRHALIGRAMDD D
Sbjct:  143 IMAEVVHSVADFANQALLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGVQNLWTSSPPPNMELAAVVIGGSFLIEGASLLVAIQSVKKGAAQEGMTIRDYIWRGHDPTSVAVMTEDGAAVAGLAIAAASLVAVRMTGNPIYDPIGSIVVGNLLGMVAIFLIQRNRHALIGRAMDDQD 335          
BLAST of CX289198 vs. ExPASy Swiss-Prot
Match: ZNT9_DANRE (Zinc transporter 9 OS=Danio rerio GN=slc30a9 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.956e-43
Identity = 85/189 (44.97%), Postives = 127/189 (67.20%), Query Frame = 1
Query:    4 MLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLVVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAM 570
            M +E +HS+AD  NQ LLA G+S S R PDA+HPYG+S  R++ SLIS VGIF +G+G +  +GI  L   +  E++ +A  ++ GS + EGA+L+VAI  +KK A  +G++  +Y+ +  DP++  V+ ED AAV G+V+A   +   ++TGN  YD +GS+ VG LLG V+ FLI  N  AL+GR++
Sbjct:  271 MFSEAIHSLADTCNQALLALGISQSVRNPDAIHPYGFSNMRYIASLISGVGIFMMGAGLSWYHGIMGLLHPQPIESLLWAYCILAGSLVSEGATLLVAINEIKKSARTQGLSFYEYVMQSRDPSTNVVLLEDAAAVLGVVLAAGCMGLTSLTGNPYYDSLGSLGVGTLLGTVSAFLIYTNTEALLGRSI 459          
BLAST of CX289198 vs. ExPASy Swiss-Prot
Match: ZNT9_XENLA (Zinc transporter 9 OS=Xenopus laevis GN=slc30a9 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.203e-41
Identity = 84/189 (44.44%), Postives = 127/189 (67.20%), Query Frame = 1
Query:    4 MLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLVVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAM 570
            M +E +HS+AD  NQ LLA G+S S R PD  HPYG++  R++ SLIS VGIF +G+G +  +GI  L   +  E++ +A  ++ GS + EGA+L+VAI  ++K + A+G++   Y+ +  DP++  V+ ED AAV GLV+A + +   ++TGN +YD +GS+ VG LLG V+ FLI  N  ALIGR++
Sbjct:  257 MFSEALHSLADTLNQALLALGISQSARTPDPGHPYGFTNMRYIASLISGVGIFMMGAGLSWYHGIIGLLHPQPIESLLWAYCILAGSLVSEGATLLVAINEIRKSSRAKGLSFYQYVMQSRDPSTNVVLMEDAAAVLGLVMAASCMGLTSLTGNPLYDSLGSLGVGTLLGAVSAFLIYTNTEALIGRSI 445          
BLAST of CX289198 vs. ExPASy Swiss-Prot
Match: ZNT9_PONAB (Zinc transporter 9 OS=Pongo abelii GN=SLC30A9 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.135e-41
Identity = 80/189 (42.33%), Postives = 126/189 (66.67%), Query Frame = 1
Query:    4 MLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLVVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAM 570
            M +E +HS++D  NQ LLA G+S S + PD  HPYG+S  R++ SLIS VGIF +G+G +  +G+  L   +  E++ +A  ++ GS + EGA+L+VA+  +++ A A+GM+   Y+    DP++  ++ ED AAV G++IA   +   ++TGN +YD +GS+ VG LLGMV+ FLI  N  AL+GR++
Sbjct:  267 MFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATLLVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNPLYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSI 455          
BLAST of CX289198 vs. ExPASy Swiss-Prot
Match: ZNT9_HUMAN (Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.135e-41
Identity = 80/189 (42.33%), Postives = 126/189 (66.67%), Query Frame = 1
Query:    4 MLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLVVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAM 570
            M +E +HS++D  NQ LLA G+S S + PD  HPYG+S  R++ SLIS VGIF +G+G +  +G+  L   +  E++ +A  ++ GS + EGA+L+VA+  +++ A A+GM+   Y+    DP++  ++ ED AAV G++IA   +   ++TGN +YD +GS+ VG LLGMV+ FLI  N  AL+GR++
Sbjct:  266 MFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATLLVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNPLYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSI 454          
BLAST of CX289198 vs. ExPASy Swiss-Prot
Match: ZNT9_MOUSE (Zinc transporter 9 OS=Mus musculus GN=Slc30a9 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.589e-40
Identity = 81/189 (42.86%), Postives = 125/189 (66.14%), Query Frame = 1
Query:    4 MLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLVVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAM 570
            M +E +HS++D  NQ LLA G+S S + PD  HPYG+S  R++ SLIS VGIF +G+G +  +GI  L   +  E++ +A  ++ GS + EGA+L+VAI  +++ A A+G T   Y+    DP++  ++ ED AAV G++IA   +   ++TGN +YD +GS+ VG LLG+V+ FLI  N  AL+GR++
Sbjct:  265 MFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGAGLSWYHGIMGLLHPQPMESLLWAYCILAGSLVSEGATLLVAINELRRSAQAKGTTFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNPLYDSLGSLGVGTLLGVVSAFLIYTNTEALLGRSI 453          
The following BLAST results are available for this feature:
BLAST of CX289198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MTPC4_ARATH8.880e-9286.53Metal tolerance protein C4 OS=Arabidopsis thaliana... [more]
ZNT9_DANRE9.956e-4344.97Zinc transporter 9 OS=Danio rerio GN=slc30a9 PE=2 ... [more]
ZNT9_XENLA3.203e-4144.44Zinc transporter 9 OS=Xenopus laevis GN=slc30a9 PE... [more]
ZNT9_PONAB7.135e-4142.33Zinc transporter 9 OS=Pongo abelii GN=SLC30A9 PE=2... [more]
ZNT9_HUMAN7.135e-4142.33Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1... [more]
ZNT9_MOUSE1.589e-4042.86Zinc transporter 9 OS=Mus musculus GN=Slc30a9 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionC02010C10SK IF1 Citrus clementina cDNA clone C02010C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289198 ID=CX289198; Name=CX289198; organism=Citrus clementina; type=EST; length=582bp
GGTATGCTGGCTGAAGTTGTGCATTCGGTTGCGGACTTTGCTAATCAGGT
GCTTCTAGCTTATGGTCTGAGTAGCTCCAGGCGTGCACCTGATGCTCTTC
ATCCTTATGGCTATTCCAAGGAACGATTTGTTTGGTCTTTGATATCAGCT
GTCGGGATCTTTTGTCTTGGTTCTGGTGCTACAATTGTCAATGGAATTCA
ACACTTGTGGACTGCAGAGGCTCCTGAAAATATGAAATATGCAGCTTTGG
TGATTTGTGGTTCATTTATCATTGAAGGTGCTTCTCTTGTTGTTGCGATA
CAAGCTGTCAAGAAAGGAGCAGCTGCAGAAGGTATGACAATAAGAGACTA
TATCTGGCGTGGTCATGACCCTACATCTGTTGCTGTTATGACAGAGGATG
GTGCTGCAGTTACCGGCCTTGTTATAGCTGGAGCATCATTGATTGCAGTT
AATGTCACAGGAAATGCAATTTATGACCCAATTGGTTCAATTATAGTTGG
AAACCTTCTTGGAATGGTGGCTATATTTCTAATACAAAGGAATCGTCATG
CTTTGATTGGTAGGGCTATGGATGACCATGAT
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