CX289206

Overview
NameCX289206
Unique NameCX289206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: GNL3_DICDI (Guanine nucleotide-binding protein-like 3 homolog OS=Dictyostelium discoideum GN=gnl3 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.223e-31
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 385
            VGATPG T+  QEV LDKNVKLLD PG+V +K G  D +I LRN  ++EK+ DP+ PV  IL+RC    ++ +Y++  + S  DFL +VA  R K+ KGGI D+ + A  ++ DW  GKIP+YT PP
Sbjct:  291 VGATPGFTKFAQEVHLDKNVKLLDSPGIVPIK-GNVDENIILRNVVKLEKVLDPIAPVDAILSRCSQKQILDIYEIAQYQSTTDFLTQVAAKRKKIVKGGIADLRSTAISVIRDWTGGKIPFYTQPP 416          
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: GNL3_CAEEL (Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis elegans GN=nst-1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 65/142 (45.77%), Postives = 94/142 (66.20%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDA-SIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPSEARIV 424
            NVG  PG+T+ +QEV+LDKN++L+D PGV+++   + D   +AL+N  R++ L DP+ PV  IL RC    ++  Y L  F+SVD FL ++A   GKL++G   DV AAA+ +L+DWN GK+ YYT PP  +QG   E  +V
Sbjct:  286 NVGNLPGITKEIQEVELDKNIRLIDSPGVILVSQKDLDPIEVALKNAIRVDNLLDPIAPVHAILRRCSKETIMLHYNLADFNSVDQFLAQLARRIGKLRRGARPDVNAAAKRVLNDWNTGKLRYYTHPP--EQGTAKEDIVV 425          
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: GNL3_DROME (Guanine nucleotide-binding protein-like 3 homolog OS=Drosophila melanogaster GN=ns1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.690e-28
Identity = 57/132 (43.18%), Postives = 84/132 (63.64%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQG 400
            VG+TPG+T+SMQEV+LD  +KL+DCPG+V    GEN  ++ L+N +R+  + DP    + +L R       ++Y + ++D+ ++F  K A   GK  K G+ DV AAAR +L+DWN GKI Y T PP   +G
Sbjct:  295 VGSTPGVTKSMQEVELDSKIKLIDCPGIVFTSGGENSHAV-LKNAQRVGDVKDPFTIAESVLKRASKEYFCTMYDITNYDTFEEFFAKKAARMGKFLKKGVPDVVAAARSVLNDWNTGKIKYCTQPPEVQEG 425          
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: GNL3L_BOVIN (Guanine nucleotide-binding protein-like 3-like protein OS=Bos taurus GN=GNL3L PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27
Identity = 66/146 (45.21%), Postives = 89/146 (60.96%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPS--EARIVSEL 433
            +VGA PG+T+ MQEV LDK ++LLD PG+V      ++    LRNC  ++KL DPV PV+ IL RC    + S Y +  F + + FL  VA   GK KKGGI   E AA+ +L DW  GKI +YT+PP+    +P+   A IV E+
Sbjct:  272 SVGAVPGVTKFMQEVYLDKFIRLLDAPGIV--PGPNSEVGTILRNCIHVQKLADPVTPVETILQRCNLEEISSYYGVSGFQTTEHFLTAVAHRLGKKKKGGIYSQEQAAKAVLADWVSGKISFYTLPPS-THTLPTHLSAEIVKEM 414          
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: GNL3L_MOUSE (Guanine nucleotide-binding protein-like 3-like protein OS=Mus musculus GN=Gnl3l PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.073e-26
Identity = 60/128 (46.88%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 385
            +VGA PG+T+ MQEV LDK ++LLD PG+V      ++    LRNC  ++KL DPV PV+ IL RC    + S Y +  F + + FL  VA   GK KKGG+   E AA+ +L DW  GKI +YT+PP
Sbjct:  273 SVGAVPGVTKFMQEVYLDKFIRLLDAPGIV--PGPNSEVGTILRNCIHVQKLADPVTPVETILQRCNLEEISSYYGVSGFQTTEHFLTAVAHRLGKKKKGGVYSQEQAAKAVLADWVSGKISFYTLPP 398          
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: GNL3L_HUMAN (Guanine nucleotide-binding protein-like 3-like protein OS=Homo sapiens GN=GNL3L PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.955e-26
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPS--EARIVSEL 433
            +VGA PG+T+ MQEV LDK ++LLD PG+V      ++    LRNC  ++KL DPV PV+ IL RC    + + Y +  F + + FL  VA   GK KKGG+   E AA+ +L DW  GKI +Y  PPA    +P+   A IV E+
Sbjct:  279 SVGAVPGITKFMQEVYLDKFIRLLDAPGIV--PGPNSEVGTILRNCVHVQKLADPVTPVETILQRCNLEEISNYYGVSGFQTTEHFLTAVAHRLGKKKKGGLYSQEQAAKAVLADWVSGKISFYIPPPA-THTLPTHLSAEIVKEM 421          
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: GNL3_DANRE (Guanine nucleotide-binding protein-like 3 OS=Danio rerio GN=gnl3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 58/146 (39.73%), Postives = 82/146 (56.16%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPS--EARIVSEL 433
            N G   GLTR MQEV + K VK++D PG++   S    A +ALR+ +  EK + P   V+ +L +C    ++  Y +P + S  +FL   A   G L+KGG+ D E AA   L+DW   K+ YY+  P R QG+PS     IV+EL
Sbjct:  288 NAGVQRGLTRCMQEVHITKKVKMIDSPGILAALSNPGSA-MALRSLQVEEKEESPQEAVRNLLKQCNQQHVMLQYNVPDYRSSLEFLTTFAMKHGLLQKGGVADTELAATTFLNDWTGAKLSYYSRVPER-QGLPSYLSDAIVTEL 431          
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: NOG2_HUMAN (Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 44/128 (34.38%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 385
            NV    G T+  Q + L + + L+DCPGVV   S +++  I L+   ++EK+  P   +  +L R     +   YK+ S+++ +DFL+K+A   GKL KGG  D++   +++L+DW  G+IP++  PP
Sbjct:  337 NVAPIAGETKVWQYITLMRRIFLIDCPGVVY-PSEDSETDIVLKGVVQVEKIKSPEDHIGAVLERAKPEYISKTYKIDSWENAEDFLEKLAFRTGKLLKGGEPDLQTVGKMVLNDWQRGRIPFFVKPP 463          
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: NOG2_MOUSE (Nucleolar GTP-binding protein 2 OS=Mus musculus GN=Gnl2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 46/140 (32.86%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPSEARI 421
            NV    G T+  Q + L + + L+DCPGVV   S +++  I L+   ++EK+  P   +  +L R     +   YK+ S+++ +DFL+K+A   GKL KGG  D+   ++++L+DW  G+IP++  PP  +  IP+++++
Sbjct:  337 NVAPIAGETKVWQYITLMRRIFLIDCPGVVY-PSEDSETDIVLKGVVQVEKIKAPQDHIGAVLERAKPEYISKTYKIESWENAEDFLEKLALRTGKLLKGGEPDMLTVSKMVLNDWQRGRIPFFVKPPNAE--IPTDSQL 473          
BLAST of CX289206 vs. ExPASy Swiss-Prot
Match: NOG2_SCHPO (Nucleolar GTP-binding protein 2 OS=Schizosaccharomyces pombe GN=nog2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.405e-18
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMP 382
            NV   PG T+  Q V L K + L+DCPG+V   S ++DA + L+   R+E + +P   +  +L+RC    L   Y++  ++   +FL K+A   G+L KGG  D  + A+++L+D+  GKIP++  P
Sbjct:  337 NVAPIPGETKVWQYVALMKRIFLIDCPGIVPPSSNDSDAELLLKGVVRVENVSNPEAYIPTVLSRCKVKHLERTYEISGWNDSTEFLAKLAKKGGRLLKGGEPDEASVAKMVLNDFMRGKIPWFIGP 463          
The following BLAST results are available for this feature:
BLAST of CX289206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GNL3_DICDI3.223e-3150.39Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3_CAEEL2.729e-3045.77Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3_DROME5.690e-2843.18Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3L_BOVIN4.817e-2745.21Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3L_MOUSE1.073e-2646.88Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3L_HUMAN6.955e-2643.84Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3_DANRE8.799e-2139.73Guanine nucleotide-binding protein-like 3 OS=Danio... [more]
NOG2_HUMAN1.659e-1934.38Nucleolar GTP-binding protein 2 OS=Homo sapiens GN... [more]
NOG2_MOUSE2.167e-1932.86Nucleolar GTP-binding protein 2 OS=Mus musculus GN... [more]
NOG2_SCHPO1.405e-1835.43Nucleolar GTP-binding protein 2 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC02010D07SK IF1 Citrus clementina cDNA clone C02010D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289206 ID=CX289206; Name=CX289206; organism=Citrus clementina; type=EST; length=433bp
AAATGTTGGGGCTACTCCTGGGTTAACCAGGTCAATGCAGGAAGTTCAGT
TAGACAAGAATGTTAAATTGTTGGACTGCCCTGGTGTTGTAATGCTTAAA
TCTGGAGAAAATGATGCATCTATAGCTCTTAGAAACTGCAAAAGGATTGA
AAAATTAGATGATCCTGTTGGTCCTGTGAAGGAAATTCTCAACCGTTGCC
CTGCCAATCTGTTGATATCACTATACAAGCTCCCCAGCTTTGATTCAGTT
GATGACTTCCTGCAGAAGGTGGCTACTGTCAGGGGTAAGCTTAAAAAGGG
TGGTATTGTGGATGTTGAAGCTGCTGCAAGGATTATTCTGCACGACTGGA
ATGAGGGTAAAATTCCATATTACACTATGCCTCCGGCTAGGGATCAAGGA
ATTCCTTCAGAGGCAAGGATAGTTTCAGAGTTA
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