CX289207

Overview
NameCX289207
Unique NameCX289207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig314 contig Ccv1_Contig314:356..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR4_ARATH (Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.318e-44
Identity = 80/136 (58.82%), Postives = 104/136 (76.47%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPV 408
            TYVFTK+MGEMLL +Y++NLPI+IIRPTMITST+ EPFPGWIEGLRTID  ++ YGKG++ C   +  ++LDLIP D+V N+M+ A   +A    SQ +YHVGSS +NPI F QIH+ A  YFTKNP + + G+ +
Sbjct:  236 TYVFTKSMGEMLLGNYRENLPIVIIRPTMITSTFSEPFPGWIEGLRTIDSVIVAYGKGRLKCFLADPNSVLDLIPVDMVANAMVTAAAIHAGKLGSQTVYHVGSSCKNPITFEQIHDLAASYFTKNPLVRRDGSSI 371          
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR1_ARATH (Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.746e-44
Identity = 77/136 (56.62%), Postives = 104/136 (76.47%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPV 408
            TYVFTKAMGEML+  Y++NLP++IIRPTMITST  EPFPGWIEGL+T+D  ++ YGKG++ C   +S ++ DLIPAD+VVN+M+ A  A++ +   Q IYHVGSS +NP+ F Q+H+F   YF K P I + G+P+
Sbjct:  234 TYVFTKAMGEMLMGKYRENLPLVIIRPTMITSTIAEPFPGWIEGLKTLDSVIVAYGKGRLKCFLADSNSVFDLIPADMVVNAMVAAATAHSGDTGIQAIYHVGSSCKNPVTFGQLHDFTARYFAKRPLIGRNGSPI 369          
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR5_ARATH (Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.134e-41
Identity = 77/134 (57.46%), Postives = 98/134 (73.13%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGN 402
            TYVFTK+MGEMLL  +K+NLP++IIRPTMITST  EPFPGWIEGLRT+D  +I YGKG + C  V+  ++ D+IP D+V N+MI A   +A      M+YHVGSS +NP+ F +IHE A  YFTKNP   + G+
Sbjct:  237 TYVFTKSMGEMLLGKHKENLPLVIIRPTMITSTLSEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDMIPVDMVANAMITAAAKHAGGSGVHMVYHVGSSHQNPVTFGEIHEIAVRYFTKNPLRSRNGS 370          
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR7_ARATH (Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana GN=FAR7 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.830e-39
Identity = 71/133 (53.38%), Postives = 99/133 (74.44%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYG 399
            TYVFTKAMGEMLL HY++ +PI+IIRPT+ITST+ +PFPGWIEGL+T+D  +I YGKG + C  V+ +T+ D+IP D+VVN+MI     + ++  S  +YHVGSS +NP+ + QI+E    YF K+P + + G
Sbjct:  163 TYVFTKAMGEMLLGHYRETMPIVIIRPTIITSTFSDPFPGWIEGLKTVDSVIIFYGKGILKCFLVDQKTVCDIIPVDMVVNAMIAIAADHCHDSGSHTVYHVGSSNQNPVIYKQIYEMMSRYFMKSPLVGRNG 295          
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR8_ARATH (Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.456e-38
Identity = 75/136 (55.15%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPV 408
            TYVFTK+MGEMLL ++K+NLP++IIRPTMITST  EPFPGWIEGLRT+D  +I YGKG + C  V+  ++ D+IPAD+V N+MI A   +A      M+Y VGSS +NPI + +I E  F YFTKN    + G+ +
Sbjct:  237 TYVFTKSMGEMLLGNHKENLPLVIIRPTMITSTLFEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDMIPADMVANAMIAAAATHAGGSKVHMVYQVGSSHQNPIIYGEIREILFCYFTKNSLRSRNGSMI 372          
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR3_ARATH (Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.569e-35
Identity = 68/136 (50.00%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPV 408
            TYVFTKAMGEM++   ++NL ++++RP++ITST+KEPFPGW EG+RTID   + YGKGK+ C   +   + D++PAD+VVNS++++M A A     ++IYHVGSSLRNP+   +  E A+ YF+  P+ +K G  V
Sbjct:  240 TYVFTKAMGEMMVGTKRENLSLVLLRPSIITSTFKEPFPGWTEGIRTIDSLAVGYGKGKLTCFLCDLDAVSDVMPADMVVNSILVSMAAQAGK-QEEIIYHVGSSLRNPMKNSKFPELAYRYFSIKPWTNKEGKVV 374          
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR2_ARATH (Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.783e-28
Identity = 56/140 (40.00%), Postives = 99/140 (70.71%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANA---NNPSSQM-IYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPV 408
            TYVFTKAMGEM+++  + ++P++IIRP++I STYK+PFPGW+EG R +D  ++ YGKG++    V+ + +LD++PAD+VVN+ + A+  +    ++P  ++ +Y + SS  NP+ F  + E  ++++  +P +D  G+P+
Sbjct:  356 TYVFTKAMGEMMINSTRGDVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGKGQLTGFLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDLAELLYNHYKTSPCMDSKGDPI 495          
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR6_ARATH (Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana GN=FAR6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLR-NPIHFFQIHEFAFHYFTKNP 381
            +Y FTKA+GE ++   + NLP++IIRP++I S+Y EPFPGWI+G R  D  ++ Y KG+I     + Q+++D+IP D+V N+ I AM  +        +Y++ SS   NP+   ++ + +  +    P
Sbjct:  299 SYTFTKAIGEAVIHSKRGNLPVVIIRPSIIESSYNEPFPGWIQGTRMADPIILAYAKGQISDFWADPQSLMDIIPVDMVANAAIAAMAKHGCGVPEFKVYNLTSSSHVNPMRAGKLIDLSHQHLCDFP 426          
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR1_RAT (Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.976e-19
Identity = 44/136 (32.35%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVN-SMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            TY++TKA+ E ++      L + I+RP+++ +++KEPFPGWI+         I  GKG +  +  ++  + DL+P DVVVN S+  A  +  N P + M+Y+  +   NP H+ ++ ++  H F  NP    + +P
Sbjct:  203 TYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVGDYLNHSFKTNPLNQVFRHP 338          
BLAST of CX289207 vs. ExPASy Swiss-Prot
Match: FACR2_HUMAN (Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.673e-18
Identity = 44/135 (32.59%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 YVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMI-MAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            Y +TKA+GEM++     NL I IIRP+++ +T++EPFPGW++ +   +  +I  GKG +  +      + D+IP D VVN M+ +      + P S ++YH+ S   NP ++ ++       F K P+   +  P
Sbjct:  204 YTYTKALGEMVVQQESRNLNIAIIRPSIVGATWQEPFPGWVDNINGPNGIIIATGKGFLRAIKATPMAVADVIPVDTVVNLMLAVGWYTAVHRPKSTLVYHITSGNMNPCNWHKMGVQVLATFEKIPFERPFRRP 338          
The following BLAST results are available for this feature:
BLAST of CX289207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
FACR4_ARATH2.318e-4458.82Probable fatty acyl-CoA reductase 4 OS=Arabidopsis... [more]
FACR1_ARATH6.746e-4456.62Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana... [more]
FACR5_ARATH3.134e-4157.46Probable fatty acyl-CoA reductase 5 OS=Arabidopsis... [more]
FACR7_ARATH3.830e-3953.38Putative fatty acyl-CoA reductase 7 OS=Arabidopsis... [more]
FACR8_ARATH1.456e-3855.15Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana... [more]
FACR3_ARATH2.569e-3550.00Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana... [more]
FACR2_ARATH1.783e-2840.00Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana... [more]
FACR6_ARATH1.369e-2036.72Fatty acyl-CoA reductase 6, chloroplastic OS=Arabi... [more]
FACR1_RAT1.976e-1932.35Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN... [more]
FACR2_HUMAN1.673e-1832.59Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2... [more]

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Properties
Property NameValue
Genbank descriptionC02010D08SK IF1 Citrus clementina cDNA clone C02010D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289207 ID=CX289207; Name=CX289207; organism=Citrus clementina; type=EST; length=410bp
ACATATGTGTTTACAAAGGCAATGGGGGAAATGCTATTAGACCACTATAA
AGACAATCTTCCTATTATCATTATACGCCCAACCATGATAACAAGCACAT
ACAAAGAACCATTCCCGGGTTGGATTGAAGGTTTGAGAACAATTGATGTT
CCACTTATTACTTATGGTAAAGGAAAAATAGATTGCTTACCTGTCAATTC
TCAGACAATACTTGATTTGATACCAGCGGACGTGGTAGTGAACTCAATGA
TCATGGCAATGGTGGCAAATGCAAATAATCCATCATCTCAAATGATTTAT
CACGTTGGCTCATCCCTAAGAAACCCAATACATTTCTTCCAAATCCACGA
GTTTGCCTTTCATTATTTTACTAAAAATCCATATATTGATAAATATGGAA
ATCCAGTTAT
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