CX289208

Overview
NameCX289208
Unique NameCX289208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig158 contig Ccv1_Contig158:1..448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.847e-17
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 446
            AMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVI
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVI 122          
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.559e-15
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 446
            AMLKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVI
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVI 117          
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.320e-14
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 446
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVI
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVI 108          
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.320e-14
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 446
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVI
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVI 112          
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 446
            A+LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVI
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVI 114          
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.906e-13
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV 443
            AMLKLGMKPV+GVSRVTIK++KNILF IS PDVFKSP S+TY+
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYI 114          
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 29/44 (65.91%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 446
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIV 121          
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 29/44 (65.91%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 446
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++
Sbjct:   77 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIV 120          
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA_PONAB (Nascent polypeptide-associated complex subunit alpha OS=Pongo abelii GN=NACA PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 29/44 (65.91%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 446
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIV 122          
BLAST of CX289208 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 29/44 (65.91%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 446
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIV 122          
The following BLAST results are available for this feature:
BLAST of CX289208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NACA2_ARATH4.847e-1795.45Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH1.559e-1590.91Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH1.320e-1484.09Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH1.320e-1484.09Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH8.555e-1481.82Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA1.906e-1381.40Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENTR6.779e-1165.91Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA6.779e-1165.91Nascent polypeptide-associated complex subunit alp... [more]
NACA_PONAB6.779e-1165.91Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI6.779e-1165.91Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02010D09SK IF1 Citrus clementina cDNA clone C02010D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289208 ID=CX289208; Name=CX289208; organism=Citrus clementina; type=EST; length=448bp
AAATAAAGAAGCAGCGGCAACCAAACCTAACAGAACAAAGTTATCCCTAT
CTATCGAGGCTAAACTAGAGAAAGCTTATCAATTTTATCAAAATGTCGCC
ACCAGCTCCCATCGTTGAGACACCAGTCGAGGAACCTGAAAAAATTAAGC
CTCAGGATGAGGATGAGCCTGTAGTTGAAGATGTTAAGGACGACGAGGAA
GAAGATGATGACCACGACAATGACGATGATGACGAGGACGACGATGACAA
CAAAGACGATGGAGCTCAAGGTGGGAGTTCAAAGCAGAGCAGAAGTGAGA
AAAAGAGCCGCAAGGCAATGCTGAAGTTGGGCATGAAACCTGTAACAGGA
GTTAGCAGGGTAACCATCAAGAGAACCAAAAATATACTATTTTTCATCTC
AAAGCCTGATGTTTTCAAGAGCCCAAATTCTGAAACATACGTCATATT
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