CX289210

Overview
NameCX289210
Unique NameCX289210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.755e-28
Identity = 55/137 (40.15%), Postives = 88/137 (64.23%), Query Frame = 2
Query:    2 HCAVYDSQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLSQQMPCVTDYAMERQVRDVYTISKFQEFQQEMI 412
            H  V  ++S   FE  W  ++ +Y+L D+EWL+ +Y +R  WVP YL +TF+A MS T RS+S+N++FDGY+N+ T L QF + Y  AL+++++KEV+ D   ++      T   ME+Q  ++YT   F  FQ+E++
Sbjct:  413 HKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFFKLYEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQASELYTRKLFMRFQEELV 549          
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.787e-23
Identity = 48/134 (35.82%), Postives = 86/134 (64.18%), Query Frame = 2
Query:   11 VYDSQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLSQQMPCVTDYAMERQVRDVYTISKFQEFQQEMI 412
            ++ S +  +F+  W  M++++ L ++EWL  L++ R  WVP ++++ F AGMS++QRSES+N+FFD Y++ K TLK+F+ QY   L+N+ ++E   D     +Q    +    E+Q+   YT + F++FQ E++
Sbjct:  392 IFRSWTDDEFDMRWWKMVSQFGLENDEWLLWLHEHRQKWVPTFMSDVFLAGMSTSQRSESVNSFFDKYIHKKITLKEFLRQYGVILQNRYEEESVADFDTCHKQPALKSPSPWEKQMATTYTHTIFKKFQVEVL 525          
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.460e-23
Identity = 46/135 (34.07%), Postives = 82/135 (60.74%), Query Frame = 2
Query:    8 AVYDSQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLSQQMPCVTDYAMERQVRDVYTISKFQEFQQEMI 412
            A+Y S  +  FE+ W  ++  + + DN WL+ LY++R +WVP Y+ +   AGM + QRS+S+N+  D Y+  KTT K F+EQY   ++ + ++E + ++  L +Q    +     +Q+ +VYT   F++FQ E++
Sbjct:  274 AIYGSCQSEDFEKNWWEVVDRFHMRDNVWLQSLYEDREYWVPVYMKDVSLAGMCTAQRSDSVNSGLDKYIQRKTTFKAFLEQYKKMIQERYEEEEKSEIETLYKQPGLKSPSPFGKQMAEVYTREMFKKFQVEVL 408          
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FRS6_ARATH (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.468e-22
Identity = 48/135 (35.56%), Postives = 81/135 (60.00%), Query Frame = 2
Query:    8 AVYDSQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLS-QQMPCVTDYAMERQVRDVYTISKFQEFQQEM 409
            AVY++    +FE  W  M+  + + +NEWLR LY+ER  W P YL +TF+AG+++    E++  FF+ YV+ +T LK+F+++Y  AL+ K ++E   D+   +       T  + E Q+  +YT   F++FQ E+
Sbjct:  411 AVYETLKVVEFEAAWGFMVHNFGVIENEWLRSLYEERAKWAPVYLKDTFFAGIAAAHPGETLKPFFERYVHKQTPLKEFLDKYELALQKKHREETLSDIESQTLNTAELKTKCSFETQLSRIYTRDMFKKFQIEV 545          
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FHY3_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.468e-22
Identity = 44/134 (32.84%), Postives = 83/134 (61.94%), Query Frame = 2
Query:   11 VYDSQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLSQQMPCVTDYAMERQVRDVYTISKFQEFQQEMI 412
            +Y S     F   W+  +  + L D++W+  LY++R  W P Y+ +   AGMS++QR++S+NAFFD Y++ KT++++FV+ Y   L+++ ++E + D    ++Q    +    E+ V +VYT + F++FQ E++
Sbjct:  401 IYKSGKDEDFARKWYKNLARFGLKDDQWMISLYEDRKKWAPTYMTDVLLAGMSTSQRADSINAFFDKYMHKKTSVQEFVKVYDTVLQDRCEEEAKADSEMWNKQPAMKSPSPFEKSVSEVYTPAVFKKFQIEVL 534          
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FRS9_ARATH (Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.629e-21
Identity = 41/137 (29.93%), Postives = 83/137 (60.58%), Query Frame = 2
Query:   11 VYDSQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLSQQMPCVTDYAMERQVRDVYTISKFQEFQQEMIRKM 421
            V ++++A +FE +W  ++  Y + DN+WL+ +Y+ R  WV  ++ +TF+  +S+ + S  +N+FF G+V++ TT++  ++QY  A+ +  +KE++ D    +      T   ME+Q   +YT + F +FQ+E +  +
Sbjct:  167 VTETETAAEFEASWDSIVRRYYMEDNDWLQSIYNARQQWVRVFIRDTFYGELSTNEGSSILNSFFQGFVDASTTMQMLIKQYEKAIDSWREKELKADYEATNSTPVMKTPSPMEKQAASLYTRAAFIKFQEEFVETL 303          
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.685e-20
Identity = 46/131 (35.11%), Postives = 77/131 (58.78%), Query Frame = 2
Query:   20 SQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLSQQMPCVTDYAMERQVRDVYTISKFQEFQQEMI 412
            +++  +FE +W  +I +YDLG +EWL  LY+ R  WVP Y  ++F+A +  +Q      +FFDGYVN +TTL  F   Y  A+++  + E+E D+  ++      T   ME Q  +++T   F +FQ+E++
Sbjct:  366 TETIEEFESSWSSVIDKYDLGRHEWLNSLYNARAQWVPVYFRDSFFAAVFPSQGYS--GSFFDGYVNQQTTLPMFFRLYERAMESWFEMEIEADLDTVNTPPVLKTPSPMENQAANLFTRKIFGKFQEELV 494          
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FRS4_ARATH (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.945e-19
Identity = 45/134 (33.58%), Postives = 78/134 (58.21%), Query Frame = 2
Query:   11 VYDSQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLSQQMPCVTDYAMERQVRDVYTISKFQEFQQEMI 412
            +Y S S  +F+  W  +I ++ L D  W+R LY+ER  W P ++    +AG+S   RSES+N+ FD YV+ +T+LK+F+E Y   L+++ ++E + D     +     +    E+Q+  VY+   F+ FQ E++
Sbjct:  329 IYRSWSEEEFDRRWLKLIDKFHLRDVPWMRSLYEERKFWAPTFMRGITFAGLSMRCRSESVNSLFDRYVHPETSLKEFLEGYGLMLEDRYEEEAKADFDAWHEAPELKSPSPFEKQMLLVYSHEIFRRFQLEVL 462          
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.540e-19
Identity = 47/133 (35.34%), Postives = 78/133 (58.65%), Query Frame = 2
Query:   11 VYDSQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLSQQMPCVTDYAMERQVRDVYTISKFQEFQQEM 409
            V  S +   FE  W +MI +++L +NEW++ L+ +R  WVP Y +    AG+S  +RS S+ + FD Y+NS+ T K F E Y   L+ +   E ++D+   S+Q    +  A E+Q+  +YT + F++FQ E+
Sbjct:  336 VASSWTDEHFERRWSNMIGKFELNENEWVQLLFRDRKKWVPHYFHGICLAGLSGPERSGSIASHFDKYMNSEATFKDFFELYMKFLQYRCDVEAKDDLEYQSKQPTLRSSLAFEKQLSLIYTDAAFKKFQAEV 468          
BLAST of CX289210 vs. ExPASy Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19
Identity = 43/135 (31.85%), Postives = 82/135 (60.74%), Query Frame = 2
Query:   11 VYDSQSATKFEETWHHMITEYDLGDNEWLRGLYDERHHWVPCYLNNTFWAGMSSTQRSESMNAFFDGYVNSKTTLKQFVEQYSCALKNKVQKEVEEDVRCLSQQMPCVTDYAMERQVRDVYTISKFQEFQQEMIR 415
            +Y +Q+  +F+  W  +I +Y L D+ WLR +Y++R +WVP YL  +F+AG+     + ++  FF   +++ T L++F+ +Y  AL+ + ++E +ED    + Q    T   +E Q R +YT++ F+ FQ E+++
Sbjct:  513 IYQTQTIVEFDSVWSALINKYGLRDDVWLREIYEQRENWVPAYLRASFFAGIPI---NGTIEPFFGASLDALTPLREFISRYEQALEQRREEERKEDFNSYNLQPFLQTKEPVEEQCRRLYTLTVFRIFQNELVQ 644          
The following BLAST results are available for this feature:
BLAST of CX289210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FRS5_ARATH1.755e-2840.15Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis tha... [more]
FAR1_ARATH3.787e-2335.82Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis... [more]
FRS1_ARATH6.460e-2334.07Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis tha... [more]
FRS6_ARATH5.468e-2235.56Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis tha... [more]
FHY3_ARATH5.468e-2232.84Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidops... [more]
FRS9_ARATH4.629e-2129.93Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis tha... [more]
FRS3_ARATH6.685e-2035.11Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis tha... [more]
FRS4_ARATH1.945e-1933.58Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis tha... [more]
FRS2_ARATH2.540e-1935.34Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis tha... [more]
FRS12_ARATH4.333e-1931.85Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC02010D11SK IF1 Citrus clementina cDNA clone C02010D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289210 ID=CX289210; Name=CX289210; organism=Citrus clementina; type=EST; length=421bp
GCATTGTGCTGTTTATGATTCCCAGAGTGCTACGAAATTTGAGGAAACTT
GGCACCATATGATTACAGAATATGATTTGGGGGATAACGAATGGTTACGA
GGCTTATATGACGAGAGGCATCATTGGGTACCTTGTTATCTAAACAATAC
GTTTTGGGCAGGAATGTCATCTACTCAACGTAGTGAAAGCATGAATGCAT
TTTTTGATGGTTATGTTAACTCAAAGACTACTTTGAAGCAGTTTGTAGAG
CAATACAGTTGTGCATTGAAGAATAAAGTTCAGAAGGAAGTTGAAGAAGA
TGTCAGGTGTCTTTCCCAACAAATGCCATGTGTAACCGATTACGCAATGG
AGAGGCAAGTTCGAGATGTGTACACTATTTCAAAATTTCAAGAATTTCAG
CAAGAAATGATTCGGAAAATG
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