CX289212

Overview
NameCX289212
Unique NameCX289212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13859 contig Ccv1_Contig13859:764..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_XENLA (Methylthioribose-1-phosphate isomerase OS=Xenopus laevis GN=mri1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.861e-41
Identity = 82/143 (57.34%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            AE +LK DV  N+ IG +GA   L+      K  +LTHCNTGSLATAGYGTALGV+R+LH+ G L   +C+ETRP+NQGSRLTA+ELV+++IP            M++ +V+AV+VGADRV ANGDT NKIGTY LA+ AK+H
Sbjct:  128 AESLLKKDVEDNQMIGDFGAKHILEKAGPTEKVCMLTHCNTGSLATAGYGTALGVVRSLHALGRLSHVFCTETRPYNQGSRLTAYELVYEKIPATLITDSMASVTMRERKVTAVVVGADRVVANGDTANKIGTYQLAIIAKYH 270          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_XENTR (Methylthioribose-1-phosphate isomerase OS=Xenopus tropicalis GN=mri1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.227e-40
Identity = 81/143 (56.64%), Postives = 103/143 (72.03%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            AE +LK DV  N+ IG +GA   L+      K  +LTHCNTGSLATAGYGTALGV+R+LH  G L   +C+ETRP+NQGSRLTA+ELV+++IP            ++D +V+AV+VGADRV ANGDT NKIGTY LA+ A++H
Sbjct:  128 AEALLKKDVEDNQMIGDFGAKHILETAGPTEKVCMLTHCNTGSLATAGYGTALGVVRSLHVLGRLSHVFCTETRPYNQGSRLTAYELVYEKIPATLITDSMASAAIRDRKVTAVVVGADRVVANGDTANKIGTYQLAITARYH 270          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_RAT (Methylthioribose-1-phosphate isomerase OS=Rattus norvegicus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.227e-40
Identity = 85/144 (59.03%), Postives = 102/144 (70.83%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQL--KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            AE ML+ D+  N++IG  GA  L  Q   +  K +VLTHCNTG+LATAGYGTALGVIR+LH  G LE  +C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDT NKIGTY LA+ AK H
Sbjct:  129 AEDMLEKDLKDNRSIGDLGARHLLEQTNPRGGKVTVLTHCNTGALATAGYGTALGVIRSLHEMGRLEHTFCTETRPYNQGARLTAFELVYEKIPATLITDSMAAAAMVHQGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHH 272          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_MOUSE (Methylthioribose-1-phosphate isomerase OS=Mus musculus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.227e-40
Identity = 85/144 (59.03%), Postives = 102/144 (70.83%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQL--KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            AE ML+ D+  N++IG  GA  L  Q   +  K +VLTHCNTG+LATAGYGTALGVIR+LH  G LE  +C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDT NKIGTY LA+ AK H
Sbjct:  129 AEDMLEKDLKDNRSIGDLGARHLLEQTNPRGGKVTVLTHCNTGALATAGYGTALGVIRSLHEMGRLEHTFCTETRPYNQGARLTAFELVYEQIPATLITDSMAAAAMAHRGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHH 272          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_HUMAN (Methylthioribose-1-phosphate isomerase OS=Homo sapiens GN=MRI1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.909e-40
Identity = 85/143 (59.44%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    9 EIMLKDDVATNKAIGSYGASFLQNQLKNS--KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            E ML+ D+  N++IG  GA  L  ++  S  K +VLTHCNTG+LATAGYGTALGVIR+LHS G LE A+C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDT NK+GTY LA+ AK H
Sbjct:  130 EDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHH 272          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_SCHPO (Methylthioribose-1-phosphate isomerase OS=Schizosaccharomyces pombe GN=mri1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.799e-40
Identity = 84/141 (59.57%), Postives = 101/141 (71.63%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNS-KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAK 425
            AE ML  D+  N  IG+ G  FL    K+  K +VLTHCNTGSLAT+GYGTALG+IR+LH  G LE AYC+ETRP+NQGSRLTAFELVHD+IP           +M   ++ A++VGADRV  NGDT NKIGTY+LA+ AK
Sbjct:  119 AERMLVKDLEDNHNIGTAGRKFLLQHYKDKDKLTVLTHCNTGSLATSGYGTALGIIRSLHESGNLEHAYCTETRPYNQGSRLTAFELVHDKIPATLVTDSTVASIMH--KIDAIVVGADRVTRNGDTANKIGTYNLAILAK 257          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_BOVIN (Methylthioribose-1-phosphate isomerase OS=Bos taurus GN=MRI1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.962e-40
Identity = 84/144 (58.33%), Postives = 103/144 (71.53%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQL--KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            AE ML  D+  N++IG  GA  L  +   +  K +VLTHCNTG+LATAGYGTALGVIR+LH+ G LE A+C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDT NK+GTY LA+ AK H
Sbjct:  129 AEDMLDKDLRDNRSIGDLGAHHLLKRAAPQGGKVTVLTHCNTGALATAGYGTALGVIRSLHNLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLIADSMAAAAMAHQGVSAVVVGADRVVANGDTANKVGTYQLAIAAKHH 272          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_METCA (Methylthioribose-1-phosphate isomerase OS=Methylococcus capsulatus GN=mtnA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.652e-35
Identity = 79/143 (55.24%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    3 AAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            AA  + +DD+A N A+G  GA+ L          VLTHCNTG+LAT GYGTALGVIR+    G LER Y +ETRP++QG+RLT +EL  DRIP           LMK G V  V+VGADR+AANGD  NKIGTYSLA+ A+ H
Sbjct:  129 AARRIHEDDLAANLAMGELGAAIL-----GGCKGVLTHCNTGALATGGYGTALGVIRSTWRRGALERVYATETRPWSQGARLTVWELGQDRIPATLLADSAAAWLMKSGAVQWVVVGADRIAANGDVANKIGTYSLAVLARHH 266          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_CLOTH (Methylthioribose-1-phosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=mtnA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.398e-34
Identity = 73/143 (51.05%), Postives = 96/143 (67.13%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            A +M K+D+ +N++IG +G     N+L    +++LTHCN G+LAT  YGTALGVIRA H  G   + +  ETRP+ QG+RLTA+EL+ D IP            MK+G +  VIVGADR+A NGDT NKIGTYSLA+ AK +N
Sbjct:  123 AYLMEKEDIESNRSIGRFG-----NELIKENWTILTHCNAGALATCDYGTALGVIRAAHESGKNIQVFADETRPYLQGARLTAWELMQDNIPVTLICDNMAGHFMKEGLIDCVIVGADRIALNGDTANKIGTYSLAVLAKENN 260          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_THISH (Methylthioribose-1-phosphate isomerase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=mtnA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.826e-34
Identity = 74/137 (54.01%), Postives = 96/137 (70.07%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            +DD+A N+ +G  GA+     L +   +VLTHCNTGSLAT GYGTALGVIR+ + +  +++ Y  ETRP+ QG+RLTA+ELV D IP           LM+ GRV  V+VGADR+AANGDT NKIGTY+LA+ A+ H
Sbjct:  133 EDDLADNRRMGELGAA-----LMDPAEAVLTHCNTGSLATGGYGTALGVIRSAYGQQRIKKVYADETRPWLQGARLTAWELVQDGIPVDLICEGAAASLMRSGRVGWVVVGADRIAANGDTANKIGTYALAVLARHH 264          
The following BLAST results are available for this feature:
BLAST of CX289212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_XENLA5.861e-4157.34Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_XENTR2.227e-4056.64Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_RAT2.227e-4059.03Methylthioribose-1-phosphate isomerase OS=Rattus n... [more]
MTNA_MOUSE2.227e-4059.03Methylthioribose-1-phosphate isomerase OS=Mus musc... [more]
MTNA_HUMAN2.909e-4059.44Methylthioribose-1-phosphate isomerase OS=Homo sap... [more]
MTNA_SCHPO3.799e-4059.57Methylthioribose-1-phosphate isomerase OS=Schizosa... [more]
MTNA_BOVIN4.962e-4058.33Methylthioribose-1-phosphate isomerase OS=Bos taur... [more]
MTNA_METCA1.652e-3555.24Methylthioribose-1-phosphate isomerase OS=Methyloc... [more]
MTNA_CLOTH1.398e-3451.05Methylthioribose-1-phosphate isomerase OS=Clostrid... [more]
MTNA_THISH1.826e-3454.01Methylthioribose-1-phosphate isomerase OS=Thioalka... [more]

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Properties
Property NameValue
Genbank descriptionC02010E01SK IF1 Citrus clementina cDNA clone C02010E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289212 ID=CX289212; Name=CX289212; organism=Citrus clementina; type=EST; length=434bp
AAGCTGCTGAAATTATGCTCAAAGATGATGTTGCTACAAACAAAGCTATT
GGTTCTTATGGGGCAAGTTTTCTTCAGAACCAGCTCAAAAATTCTAAATT
CTCTGTTCTTACTCATTGCAACACTGGCAGTCTTGCAACAGCTGGATATG
GTACCGCCCTTGGTGTGATCCGTGCACTTCATTCTGAGGGAGTGTTAGAA
AGAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCAC
TGCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACT
CTGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTC
GGAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAAC
CTACAGCCTTGCATTATGTGCAAAGTTTCATAAT
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