CX289214

Overview
NameCX289214
Unique NameCX289214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig314 contig Ccv1_Contig314:356..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR4_ARATH (Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.634e-45
Identity = 81/138 (58.70%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPVIV 414
            TYVFTK+MGEMLL +Y++NLPI+IIRPTMITST+ EPFPGWIEGLRTID  ++ YGKG++ C   +  ++LDLIP D+V N+M+ A   +A    SQ +YHVGSS +NPI F QIH+ A  YFTKNP + + G+ ++V
Sbjct:  236 TYVFTKSMGEMLLGNYRENLPIVIIRPTMITSTFSEPFPGWIEGLRTIDSVIVAYGKGRLKCFLADPNSVLDLIPVDMVANAMVTAAAIHAGKLGSQTVYHVGSSCKNPITFEQIHDLAASYFTKNPLVRRDGSSILV 373          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR1_ARATH (Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.905e-45
Identity = 79/138 (57.25%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPVIV 414
            TYVFTKAMGEML+  Y++NLP++IIRPTMITST  EPFPGWIEGL+T+D  ++ YGKG++ C   +S ++ DLIPAD+VVN+M+ A  A++ +   Q IYHVGSS +NP+ F Q+H+F   YF K P I + G+P+IV
Sbjct:  234 TYVFTKAMGEMLMGKYRENLPLVIIRPTMITSTIAEPFPGWIEGLKTLDSVIVAYGKGRLKCFLADSNSVFDLIPADMVVNAMVAAATAHSGDTGIQAIYHVGSSCKNPVTFGQLHDFTARYFAKRPLIGRNGSPIIV 371          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR5_ARATH (Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.395e-41
Identity = 78/138 (56.52%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPVIV 414
            TYVFTK+MGEMLL  +K+NLP++IIRPTMITST  EPFPGWIEGLRT+D  +I YGKG + C  V+  ++ D+IP D+V N+MI A   +A      M+YHVGSS +NP+ F +IHE A  YFTKNP   + G+ + V
Sbjct:  237 TYVFTKSMGEMLLGKHKENLPLVIIRPTMITSTLSEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDMIPVDMVANAMITAAAKHAGGSGVHMVYHVGSSHQNPVTFGEIHEIAVRYFTKNPLRSRNGSLITV 374          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR7_ARATH (Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana GN=FAR7 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.909e-39
Identity = 71/137 (51.82%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPVI 411
            TYVFTKAMGEMLL HY++ +PI+IIRPT+ITST+ +PFPGWIEGL+T+D  +I YGKG + C  V+ +T+ D+IP D+VVN+MI     + ++  S  +YHVGSS +NP+ + QI+E    YF K+P + + G  ++
Sbjct:  163 TYVFTKAMGEMLLGHYRETMPIVIIRPTIITSTFSDPFPGWIEGLKTVDSVIIFYGKGILKCFLVDQKTVCDIIPVDMVVNAMIAIAADHCHDSGSHTVYHVGSSNQNPVIYKQIYEMMSRYFMKSPLVGRNGMLIV 299          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR8_ARATH (Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.482e-39
Identity = 76/138 (55.07%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPVIV 414
            TYVFTK+MGEMLL ++K+NLP++IIRPTMITST  EPFPGWIEGLRT+D  +I YGKG + C  V+  ++ D+IPAD+V N+MI A   +A      M+Y VGSS +NPI + +I E  F YFTKN    + G+ + V
Sbjct:  237 TYVFTKSMGEMLLGNHKENLPLVIIRPTMITSTLFEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDMIPADMVANAMIAAAATHAGGSKVHMVYQVGSSHQNPIIYGEIREILFCYFTKNSLRSRNGSMITV 374          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR3_ARATH (Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.952e-35
Identity = 69/138 (50.00%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPVIV 414
            TYVFTKAMGEM++   ++NL ++++RP++ITST+KEPFPGW EG+RTID   + YGKGK+ C   +   + D++PAD+VVNS++++M A A     ++IYHVGSSLRNP+   +  E A+ YF+  P+ +K G  V V
Sbjct:  240 TYVFTKAMGEMMVGTKRENLSLVLLRPSIITSTFKEPFPGWTEGIRTIDSLAVGYGKGKLTCFLCDLDAVSDVMPADMVVNSILVSMAAQAGK-QEEIIYHVGSSLRNPMKNSKFPELAYRYFSIKPWTNKEGKVVKV 376          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR2_ARATH (Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.656e-29
Identity = 57/142 (40.14%), Postives = 101/142 (71.13%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANA---NNPSSQM-IYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPVIV 414
            TYVFTKAMGEM+++  + ++P++IIRP++I STYK+PFPGW+EG R +D  ++ YGKG++    V+ + +LD++PAD+VVN+ + A+  +    ++P  ++ +Y + SS  NP+ F  + E  ++++  +P +D  G+P++V
Sbjct:  356 TYVFTKAMGEMMINSTRGDVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGKGQLTGFLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDLAELLYNHYKTSPCMDSKGDPIMV 497          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR6_ARATH (Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana GN=FAR6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQMIYHVGSSLR-NPIHFFQIHEFAFHYFTKNP 381
            +Y FTKA+GE ++   + NLP++IIRP++I S+Y EPFPGWI+G R  D  ++ Y KG+I     + Q+++D+IP D+V N+ I AM  +        +Y++ SS   NP+   ++ + +  +    P
Sbjct:  299 SYTFTKAIGEAVIHSKRGNLPVVIIRPSIIESSYNEPFPGWIQGTRMADPIILAYAKGQISDFWADPQSLMDIIPVDMVANAAIAAMAKHGCGVPEFKVYNLTSSSHVNPMRAGKLIDLSHQHLCDFP 426          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR1_RAT (Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.149e-19
Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVN-SMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNPVI 411
            TY++TKA+ E ++      L + I+RP+++ +++KEPFPGWI+         I  GKG +  +  ++  + DL+P DVVVN S+  A  +  N P + M+Y+  +   NP H+ ++ ++  H F  NP    + +P +
Sbjct:  203 TYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVGDYLNHSFKTNPLNQVFRHPYV 340          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR2_HUMAN (Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 44/135 (32.59%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 YVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMI-MAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            Y +TKA+GEM++     NL I IIRP+++ +T++EPFPGW++ +   +  +I  GKG +  +      + D+IP D VVN M+ +      + P S ++YH+ S   NP ++ ++       F K P+   +  P
Sbjct:  204 YTYTKALGEMVVQQESRNLNIAIIRPSIVGATWQEPFPGWVDNINGPNGIIIATGKGFLRAIKATPMAVADVIPVDTVVNLMLAVGWYTAVHRPKSTLVYHITSGNMNPCNWHKMGVQVLATFEKIPFERPFRRP 338          
The following BLAST results are available for this feature:
BLAST of CX289214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
FACR4_ARATH4.634e-4558.70Probable fatty acyl-CoA reductase 4 OS=Arabidopsis... [more]
FACR1_ARATH7.905e-4557.25Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana... [more]
FACR5_ARATH1.395e-4156.52Probable fatty acyl-CoA reductase 5 OS=Arabidopsis... [more]
FACR7_ARATH2.909e-3951.82Putative fatty acyl-CoA reductase 7 OS=Arabidopsis... [more]
FACR8_ARATH6.482e-3955.07Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana... [more]
FACR3_ARATH1.952e-3550.00Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana... [more]
FACR2_ARATH4.656e-2940.14Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana... [more]
FACR6_ARATH1.358e-2036.72Fatty acyl-CoA reductase 6, chloroplastic OS=Arabi... [more]
FACR1_RAT1.149e-1931.88Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN... [more]
FACR2_HUMAN1.660e-1832.59Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2... [more]

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Properties
Property NameValue
Genbank descriptionC02010E03SK IF1 Citrus clementina cDNA clone C02010E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289214 ID=CX289214; Name=CX289214; organism=Citrus clementina; type=EST; length=415bp
ACATATGTGTTTACAAAGGCAATGGGGGAAATGCTATTAGACCACTATAA
AGACAATCTTCCTATTATCATTATACGCCCAACCATGATAACAAGCACAT
ACAAAGAACCATTCCCGGGTTGGATTGAAGGTTTGAGAACAATTGATGTT
CCACTTATTACTTATGGTAAAGGAAAAATAGATTGCTTACCTGTCAATTC
TCAGACAATACTTGATTTGATACCAGCGGACGTGGTAGTGAACTCAATGA
TCATGGCAATGGTGGCAAATGCAAATAATCCATCATCTCAAATGATTTAT
CACGTTGGCTCATCCCTAAGAAACCCAATACATTTCTTCCAAATCCACGA
GTTTGCCTTTCATTATTTTACTAAAAATCCATATATTGATAAATATGGAA
ATCCAGTTATAGTTG
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