CX289219

Overview
NameCX289219
Unique NameCX289219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:141..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.243e-46
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  105 AMSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            A ST+GQVITCKAAVAWE NKP+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI
Sbjct:    2 ASSTQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 94          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 3.243e-46
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M+T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKIL+TALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ GDHVI
Sbjct:    1 MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQAGDHVI 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.224e-46
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  105 AMSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            A ST+GQVITCKAAVAWE N+P+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI
Sbjct:    2 ASSTQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 94          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.224e-46
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 3
Query:  105 AMSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            A  T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEGLFPCILGHEAAGIVESVGEGVT+VQPGDHVI
Sbjct:    2 ASPTQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDVQPGDHVI 94          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.356e-43
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +T+GQVITCKAAVAWEPNKPL IEDV+VAPPQA EVRI+ILFTALCHTDAYT  GKDPEGLFPCILGHEAAGIVESVGEGVT+V+PGDHVI
Sbjct:    1 ATQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGKDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.459e-38
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MSTEG+VITCKAAVAWE  KPLVIED++V PPQ GEVRIKIL+T +CHTD+YT SG DPEG+FPCILGHE  GIVES+GEGVT V+ GDHVI
Sbjct:    1 MSTEGKVITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHTDSYTLSGSDPEGIFPCILGHEGGGIVESIGEGVTSVKVGDHVI 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 4.393e-35
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +TEG+VITCKAAVAWE  KPLVIED++VAPP+A EVRIKI  T +CHTDA+T SG DPEGLFP +LGHE AGIVESVGEGVT  + GDHVI
Sbjct:    3 ATEGKVITCKAAVAWEAKKPLVIEDIEVAPPKAHEVRIKITATGVCHTDAFTLSGADPEGLFPVVLGHEGAGIVESVGEGVTNFKAGDHVI 93          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.180e-34
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MST GQ+I CKAAVAWE  KPLVIE+V+VAPPQ  EVRIKILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT++QPGDHV+
Sbjct:    1 MSTTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVL 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.285e-34
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M T G+VI CKAAVAWEP KPL IE+V+VAPP A EVRIK+  T +CHTDAYT SG DPEGLFP ILGHE AG VESVGEGVT+ +PGD VI
Sbjct:    1 METAGKVIKCKAAVAWEPGKPLSIEEVEVAPPNAHEVRIKLFATGVCHTDAYTLSGSDPEGLFPVILGHEGAGTVESVGEGVTKFKPGDTVI 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.082e-33
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            ST GQVI CKAAVAW    PL IE +QVAPP+A EVR+KIL+TA+CHTDAYT  G DPEGLFP +LGHE +GIVESVGEGVT   PGDHV+
Sbjct:    3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVV 93          
The following BLAST results are available for this feature:
BLAST of CX289219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ADHX_ORYSI3.243e-4692.47Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ARATH3.243e-4694.57Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_ORYSJ7.224e-4691.40Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_MAIZE7.224e-4692.47Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADHX_PEA3.356e-4389.01Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]
ADHX_DICDI1.459e-3878.26Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]
ADHX_DROME4.393e-3575.82Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
ADH1_ARATH2.180e-3473.91Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADHX_SPAAU8.285e-3473.91Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]
ADHX_CAEEL1.082e-3372.53Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]

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Properties
Property NameValue
Genbank descriptionC02010E08SK IF1 Citrus clementina cDNA clone C02010E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289219 ID=CX289219; Name=CX289219; organism=Citrus clementina; type=EST; length=384bp
GCCACTCTCAGACCGTGTCACGTCCCTTTTTAATAATAATATCTATCTGC
ATCTACTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTC
AGCAGCCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGG
CCTGGGAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCG
CCTCAGGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCA
CACTGATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTT
GTATCCTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
GTGACCGAGGTTCAACCAGGTGATCATGTCATCC
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