CX289224

Overview
NameCX289224
Unique NameCX289224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14465 contig Ccv1_Contig14465:364..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.773e-48
Identity = 92/133 (69.17%), Postives = 103/133 (77.44%), Query Frame = 1
Query:    1 GQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEYKQHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            GQRGWRELA+LGDKM+KFSGMIEGFIWSP+ G+ N+  D W  E+                GPHSDF GPTSG TACVA+I+DK+L VANAGDSRCV+SRK QA NLSKDHKPDLEVEK+RILKAGGFI  GR
Sbjct:  104 GQRGWRELAVLGDKMNKFSGMIEGFIWSPRSGDTNNQPDSWPLED----------------GPHSDFTGPTSGCTACVALIKDKKLFVANAGDSRCVISRKSQAYNLSKDHKPDLEVEKERILKAGGFIHAGR 220          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.422e-46
Identity = 90/133 (67.67%), Postives = 102/133 (76.69%), Query Frame = 1
Query:    1 GQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEYKQHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            GQRGWRELA+LGDK++KFSGMIEG IWSP+ G++ +  D WA EE                GPHSDF GP SGSTACVA++RDKQL VANAGDSRCV+SRK QA NLS+DHKPDLE EK+RILKAGGFI  GR
Sbjct:  104 GQRGWRELAVLGDKINKFSGMIEGLIWSPRSGDSANKPDAWAFEE----------------GPHSDFAGPNSGSTACVAVVRDKQLFVANAGDSRCVISRKNQAYNLSRDHKPDLEAEKERILKAGGFIHAGR 220          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.857e-46
Identity = 88/133 (66.17%), Postives = 103/133 (77.44%), Query Frame = 1
Query:    1 GQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEYKQHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            GQRGWREL  LGDK+++ SGMIEG IWSP+G ++ND  DDWA EE                GPHSDF GPT GSTACVAI+R+ QLVVANAGDSRCV+SR GQA NLS+DHKP+LE E++RILKAGG+IQ+GR
Sbjct:  104 GQRGWRELQALGDKINQISGMIEGLIWSPRGSDSNDQHDDWAFEE----------------GPHSDFAGPTCGSTACVAIVRNSQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGGYIQMGR 220          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.270e-44
Identity = 85/133 (63.91%), Postives = 101/133 (75.94%), Query Frame = 1
Query:    1 GQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEYKQHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            GQRGWREL+ LGDK++K  GMIEG IWSP+G ++N+  DDW+ EE                GPHSDF GPT G TACVA+IR+ QLVVANAGDSRCV+SR GQA NLS+DHKP+LE E+DRI+KAGGFI +GR
Sbjct:  104 GQRGWRELSALGDKINKIGGMIEGLIWSPRGSDSNNGQDDWSFEE----------------GPHSDFAGPTCGCTACVALIRNNQLVVANAGDSRCVISRAGQAYNLSRDHKPELEAERDRIVKAGGFIHMGR 220          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.125e-42
Identity = 86/133 (64.66%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 GQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEYKQHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            GQRGWRELA LGDK  KF+GM+EG IWSPK GE++   D W  E                 GPHS F GPTSGSTACVAIIR+ +L+VANAGDSRCVLSRKG+A +LSKDHKPDL+ EK+RIL AGGFI  GR
Sbjct:  104 GQRGWRELAELGDKGQKFTGMLEGIIWSPKPGESDKPEDTWTEE-----------------GPHSHFPGPTSGSTACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIVAGR 219          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C21_ORYSJ (Probable protein phosphatase 2C 21 OS=Oryza sativa subsp. japonica GN=Os02g0606900 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.933e-15
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  217 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            GSTACV IIR  Q++V N GDSRCVLS+ GQA++LS DHKP  E E++RI +AGG + + R
Sbjct:  142 GSTACVVIIRGNQIIVGNVGDSRCVLSKNGQAISLSFDHKPHHEAERERIQRAGGHVFLQR 202          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C20_ORYSJ (Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica GN=Os02g0600000 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.933e-15
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  187 PHSDFHGPT-SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG 381
            P + +  P+  GSTACV +IR  QL+V +AGDSRCVLSR GQA  LS DHKPD E E++R+  AGG
Sbjct:  182 PQATYTAPSYEGSTACVVVIRGDQLIVGHAGDSRCVLSRNGQASALSVDHKPDSESERERVQNAGG 247          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C22_ORYSJ (Putative protein phosphatase 2C 22 OS=Oryza sativa subsp. japonica GN=Os02g0607500 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  217 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG 381
            GSTACV IIR  Q+ V N GDSRCVLS+ GQA++LS DHKP++ +E+ RIL+ GG
Sbjct:  235 GSTACVVIIRGNQITVGNVGDSRCVLSKNGQAIDLSTDHKPNVPLERQRILRVGG 289          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1
Query:  205 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG 381
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG
Sbjct:  321 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGG 379          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1
Query:  205 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG 381
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG
Sbjct:  325 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGG 383          
The following BLAST results are available for this feature:
BLAST of CX289224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
P2C21_ARATH5.773e-4869.17Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C60_ARATH1.422e-4667.67Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C58_ORYSJ1.857e-4666.17Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ2.270e-4463.91Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C70_ORYSJ2.125e-4264.66Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
P2C21_ORYSJ4.933e-1560.66Probable protein phosphatase 2C 21 OS=Oryza sativa... [more]
P2C20_ORYSJ4.933e-1559.09Probable protein phosphatase 2C 20 OS=Oryza sativa... [more]
P2C22_ORYSJ1.099e-1463.64Putative protein phosphatase 2C 22 OS=Oryza sativa... [more]
PPM1G_MOUSE1.435e-1466.10Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]
PPM1G_MACFA1.435e-1466.10Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC02010F01SK IF1 Citrus clementina cDNA clone C02010F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289224 ID=CX289224; Name=CX289224; organism=Citrus clementina; type=EST; length=401bp
GGACAAAGGGGATGGAGAGAATTAGCTATACTGGGAGATAAAATGGACAA
GTTTTCTGGCATGATTGAGGGGTTCATATGGTCTCCTAAGGGTGGTGAAG
CCAATGATCATTTTGACGATTGGGCATCGGAGGAGTACAAGCAACATGGC
TTTCTGCGGTATCTTATCAACAGACTTTTGATTGGTCCTCACTCAGATTT
TCATGGACCAACTTCTGGAAGTACAGCTTGCGTAGCAATCATTAGAGACA
AGCAACTCGTGGTTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCGAGG
AAGGGCCAGGCACTTAATCTATCTAAAGACCATAAGCCTGATCTTGAGGT
TGAGAAAGATAGAATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTG
T
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