CX289225

Overview
NameCX289225
Unique NameCX289225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.260e-58
Identity = 115/129 (89.15%), Postives = 116/129 (89.92%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ            FAEEDKKVK
Sbjct:   61 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVK 189
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.260e-58
Identity = 115/129 (89.15%), Postives = 116/129 (89.92%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ            FAEEDKKVK
Sbjct:   61 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVK 189
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 6.251e-58
Identity = 113/129 (87.60%), Postives = 115/129 (89.15%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTK IPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCR LGKFDL+GIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGK+EKITITNDKGRLSQ            FAEEDKKVK
Sbjct:  437 TVGGVMTKFIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKAEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVK 565
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 6.251e-58
Identity = 113/129 (87.60%), Postives = 116/129 (89.92%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERS+TKDCRLLGKFDL+GIP APRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITN+KGRLSQ            FAEEDKKVK
Sbjct:  434 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLNGIPSAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVK 562
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 6.251e-58
Identity = 113/129 (87.60%), Postives = 116/129 (89.92%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERS+TKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITN+KGRLSQ            FAEEDKKVK
Sbjct:  434 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLNGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVK 562
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 6.251e-58
Identity = 113/129 (87.60%), Postives = 116/129 (89.92%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDL+GIPPAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITN+KGRLSQ            FAEEDKKVK
Sbjct:  436 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLNGIPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVK 564
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 8.164e-58
Identity = 112/129 (86.82%), Postives = 116/129 (89.92%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDL+G+PPAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITN+KGRLSQ            FAEEDKKVK
Sbjct:  436 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGVPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVK 564
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.052e-57
Identity = 112/129 (86.82%), Postives = 115/129 (89.15%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTV+IQVFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQ            FAEEDKKVK
Sbjct:  437 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVTIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVK 565
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.052e-57
Identity = 112/129 (86.82%), Postives = 115/129 (89.15%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTV+IQVFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQ            FAEEDKKVK
Sbjct:  438 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVTIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVK 566
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: BIP8_TOBAC (Luminal-binding protein 8 (Fragment) OS=Nicotiana tabacum GN=BIP8 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.179e-56
Identity = 111/129 (86.05%), Postives = 115/129 (89.15%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIP+KKSQVFTTYQDQQTTV+IQVFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQ            FAEEDKKVK
Sbjct:   64 TVGGVMTKLIPRNTVIPSKKSQVFTTYQDQQTTVTIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVK 192
The following BLAST results are available for this feature:
BLAST of CX289225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP2_TOBAC1.260e-5889.15Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
BIP1_TOBAC1.260e-5889.15Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
BIP_SOLLC6.251e-5887.60Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP3_MAIZE6.251e-5887.60Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE6.251e-5887.60Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
BIP1_ARATH6.251e-5887.60Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP2_ARATH8.164e-5886.82Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP_SPIOL4.052e-5786.82Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
BIP4_TOBAC4.052e-5786.82Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP8_TOBAC1.179e-5686.05Luminal-binding protein 8 (Fragment) OS=Nicotiana ... [more]

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Properties
Property NameValue
Genbank descriptionC02010F02SK IF1 Citrus clementina cDNA clone C02010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289225 ID=CX289225; Name=CX289225; organism=Citrus clementina; type=EST; length=389bp
AGACAGTTGGTGGGGTGATGACCAAGTTGATCCCAAGAAACACGGTCATT
CCAACCAAGAAATCTCAAGTTTTCACCACTTATCAAGACCAGCAGACTAC
AGTTTCCATTCAGGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGATTGCA
GATTGCTTGGGAAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGGA
ACCCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAAA
TGTAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATCA
CAAATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGAGCGTATGGTTCGT
GAGGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAG
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