CX289230

Overview
NameCX289230
Unique NameCX289230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8299 contig Ccv1_Contig8299:270..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX289230 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 125.946 bits (315), Expect = 6.073e-29
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:   22 VVLXXXXXXXNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF 390
            +VL        SGI N +L+   D  +NSLS+QP+  L   SDLPYRMA+HP   G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG++ AAG+E+G LRVF
Sbjct:   60 IVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVF 180
The following BLAST results are available for this feature:
BLAST of CX289230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STLP2_ARATH6.073e-2949.59SEC12-like protein 2 OS=Arabidopsis thaliana GN=ST... [more]
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Properties
Property NameValue
Genbank descriptionC02010F07SK IF1 Citrus clementina cDNA clone C02010F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289230 ID=CX289230; Name=CX289230; organism=Citrus clementina; type=EST; length=392bp
GATATTCGCCGCAACTACTACGTCGTTTTGGCCGGCGGTGGTGGTGCGGG
CAACAGCGGCATCCGCAACGCCGTCCTTTTGTCTCACTTCGATTTCGCCT
CCAATTCCCTCTCCGATCAGCCGGTGGCTGAGCTTCGAACTGATTCTGAT
TTGCCTTATCGAATGGCTATTCACCCGCACGGTGATGGCATTATTTGTGC
ATTGCAAAATAGCTGCAGATTGTTTGAGTGGGATGAAGTGGAGAACACTG
AAATCCGTAGACTGGGTGTGAAAATTTCAGAGAAAGTGCTCAGCCAGTTA
GAAAATGTTGGACAACAGTTAGCACTAACATTCGACTCTGAGGGTACTAT
ATTTGCTGCTGGTAGTGAGAATGGCAATTTAAGGGTTTTCAA
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