CX289237

Overview
NameCX289237
Unique NameCX289237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9487 contig Ccv1_Contig9487:458..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 1.663e-54
Identity = 97/140 (69.29%), Postives = 116/140 (82.86%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            FPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR +VE+VP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +    A++
Sbjct:  152 FPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQE 291          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 1.663e-54
Identity = 97/140 (69.29%), Postives = 116/140 (82.86%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            FPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR +VE+VP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +    A++
Sbjct:  152 FPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQE 291          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.706e-54
Identity = 94/140 (67.14%), Postives = 119/140 (85.00%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            FPAFDQIVNEAAK+RYRSG QF+CG LT+R+PYGAVGHGGHYHSQSPE++F H PGLKVVIP +P +AKGLLL+ IR+ +PV+FFEPK +YR +VEEVP  DY +PL +A +++EG DIT++GWGAQ+ ++ QA   AE+
Sbjct:  132 FPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMYRSAVEEVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQAVNMAEE 271          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 4.840e-54
Identity = 95/140 (67.86%), Postives = 116/140 (82.86%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            FPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P+G VGHG  YHSQSPEAFF H PG+KVV+PRSP QAKGLLLSCI D NP +FFEPK LYR +VE+VP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +    A++
Sbjct:  154 FPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQE 293          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 1.078e-53
Identity = 96/140 (68.57%), Postives = 115/140 (82.14%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            FPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR + EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +    A++
Sbjct:  154 FPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKE 293          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.485e-36
Identity = 77/140 (55.00%), Postives = 94/140 (67.14%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            FP FDQ+V++ AK RYRSG QF    L VR P G    GGH+HSQSPEA F H  GLKVV   +P  AKGLL + IRD +PVVF EPK LYR   EEVPE+DY LP+ +A + REG D+TL+G+G  +  + QA  +  K
Sbjct:   88 FPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.950e-35
Identity = 76/140 (54.29%), Postives = 93/140 (66.43%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            FP FDQ+V++ AK RYRSG QF    L VR P G    GGH+HSQSPEA F H  GLKVV   +P  AKGLL + IRD +PVVF EPK LYR   EEVPE+DY L + +A + REG D+TL+G+G  +  + QA  +  K
Sbjct:   88 FPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLSIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.464e-34
Identity = 74/139 (53.24%), Postives = 96/139 (69.06%), Query Frame = 3
Query:   27 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            PA +QI++EAAK RYRS N ++C  + VRAPYG   HG  YHSQS EA F + PGLK+V+P +P  AKGLL + +RD +PV+FFE K  YRL   EVP DDY+LP+ +A+V REG DIT++ +G  +    QA    EK
Sbjct:   89 PAVNQIISEAAKIRYRSNNDWSCP-IVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAYRLIKGEVPADDYVLPIGKADVKREGDDITVITYGLCVHFALQAAERLEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 2.264e-27
Identity = 61/144 (42.36%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            FG  +   D I  + A+ RYR+G +++   +T+R+P+G   H    HS S E      PGLKVVIP +P  AKGLL+S IRD +PV+F E   LYR   +EVPE +Y +P+ +A++ REG DIT++ +GA +    +A  + EK
Sbjct:   84 FGFVYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.957e-27
Identity = 58/134 (43.28%), Postives = 88/134 (65.67%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 425
            FP +  +V  AA+ R RS  QF    + +R P+G       +HS++ E  F  +PGLKVV P +P  AKGLLL+ I DP+PVVF EPK +YR   +EVP + Y +P+ +A+V+++G+D+T+V WG+ +  +E+A
Sbjct:   88 FPGYTDLVTHAARMRNRSRGQFTVP-MVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVFLEPKRIYRAGKQEVPAEMYEIPIGKAKVVKQGTDMTVVAWGSIVREVEKA 220          
The following BLAST results are available for this feature:
BLAST of CX289237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBB_RAT1.663e-5469.292-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE1.663e-5469.292-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_DICDI3.706e-5467.142-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN4.840e-5467.862-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN1.078e-5368.572-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_THET83.485e-3655.002-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET22.950e-3554.292-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_BACSU1.464e-3453.242-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODPB_BACST2.264e-2742.36Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ACHLA2.957e-2743.28Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC02010G03SK IF1 Citrus clementina cDNA clone C02010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289237 ID=CX289237; Name=CX289237; organism=Citrus clementina; type=EST; length=443bp
GGGCTGCAGGATTCGGACGAGGTTTTCCAGCTTTTGATCAGATTGTCAAT
GAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAGG
ATTAACAGTAAGAGCCCCTTATGGAGCTGTGGGCCATGGTGGACACTATC
ACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTG
GTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCAT
TCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTT
TGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTATCAGAG
GCAGAGGTGATTCGAGAAGGCAGTGACATAACACTTGTTGGCTGGGGAGC
ACAACTCTCTATCATGGAGCAGGCCTGTTTAGATGCTGAAAAG
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