CX289240

Overview
NameCX289240
Unique NameCX289240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig157 contig Ccv1_Contig157:1..452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 6.555e-57
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 2
Query:   20 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 355
            MVLKTELC+FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIA EAVKK+RR TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 112          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 9.465e-56
Identity = 110/143 (76.92%), Postives = 116/143 (81.12%), Query Frame = 2
Query:   20 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALXXXXXXXXXXXXXXXXXXXXXMSKSQKSQVK 448
            MVLKTELC+FSGAKIYPG+GIRFIR DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQHKKD A EAVKK+RRATKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAAL                      SK+QKSQ K
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSQGK 143          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.047e-54
Identity = 108/143 (75.52%), Postives = 114/143 (79.72%), Query Frame = 2
Query:   20 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALXXXXXXXXXXXXXXXXXXXXXMSKSQKSQVK 448
            MVLKTELC+FSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD A EAVK++RRATKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAAL                      SK QKSQVK
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVEYASKQQKSQVK 143          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 8.859e-54
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   20 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 355
            MVLKTELC+FSG KIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQHKKDI AEA KK+RR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:    1 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 4.397e-53
Identity = 100/112 (89.29%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   20 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 355
            MVLKTELC+FSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD A EAVK++RRATKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 355
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 355
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.815e-26
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 355
            +K EL  FSG KIYPG+G  F+R DS++F F +SK    FH R  P +++WT +YR+QHKK I+ E+ K++ R T K   R+IVGA+LE+I++RR++KP  R AAR+  L
Sbjct:    1 MKVELDSFSGTKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVK-NQRAIVGASLELIKERRSQKPSDRKAARDVKL 109          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.970e-25
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAARE 346
            +K E+  FSGAKIYPG+G  F+R DS+VF F +SK    FH R  P ++ WT +YR+ HKK I  E  KK+ R T K   R++VGA+LE+I++RR+ KPE+R A R+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKRD 106          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata GN=RPL24 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.616e-25
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAARE 346
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT +YR+ HKK I  E  KK+ R T K   R+IVGA+LE+I++RR+ KPEVR A R+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKRD 106          
The following BLAST results are available for this feature:
BLAST of CX289240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL24_PRUAV6.555e-5796.4360S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_CICAR9.465e-5676.9260S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL241_ARATH1.047e-5475.5260S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24_HORVU8.859e-5491.0760S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
RL242_ARATH4.397e-5389.2960S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL24B_SCHPO2.686e-2650.9160S ribosomal protein L24-B OS=Schizosaccharomyces... [more]
RL24A_SCHPO2.686e-2650.9160S ribosomal protein L24-A OS=Schizosaccharomyces... [more]
RL24_DEBHA7.815e-2650.0060S ribosomal protein L24 OS=Debaryomyces hansenii... [more]
RL24_ASHGO2.970e-2550.4760S ribosomal protein L24 OS=Ashbya gossypii GN=RP... [more]
RL24_CANGA6.616e-2551.4060S ribosomal protein L24 OS=Candida glabrata GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC02010G06SK IF1 Citrus clementina cDNA clone C02010G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289240 ID=CX289240; Name=CX289240; organism=Citrus clementina; type=EST; length=452bp
AGCAACACCATCAGAAACCATGGTTCTCAAGACTGAACTTTGCAAATTCA
GCGGTGCCAAGATATACCCTGGTAAGGGTATCAGATTTATTCGTTCAGAC
TCTCAGGTTTTCCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAA
CCGATTGAAGCCATCGAAGCTTACATGGACAGCCATGTACAGGAAACAGC
ACAAGAAGGACATTGCTGCTGAGGCAGTTAAGAAGAAGCGTCGTGCCACT
AAGAAGCCCTATTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCA
GAAGAGAAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTG
CACTTCGTGAAATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAGAAG
GCAAAGAAAGCGGAGACGATGTCCAAGTCACAGAAGTCTCAAGTCAAAAG
TA
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