CX289244

Overview
NameCX289244
Unique NameCX289244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig183 contig Ccv1_Contig183:1..378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVDNVLPPTGA+MS IYDE K+EDGFLYVTYSGENTFG
Sbjct:   75 KAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVDNVLPP GA+MS +Y+EKKD+DGFLYVTYSGENTFG
Sbjct:   75 KAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.585e-16
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVDNVLPPTG +MS +Y++KKDEDGFLY+TYSGENTFG
Sbjct:   76 KAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_PODAN (Autophagy-related protein 8 OS=Podospora anserina GN=ATG8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.069e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD VLPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_PHANO (Autophagy-related protein 8 OS=Phaeosphaeria nodorum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.069e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD VLPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_PENCW (Autophagy-related protein 8 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.069e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD VLPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_NEUCR (Autophagy-related protein 8 OS=Neurospora crassa GN=atg-8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.069e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD VLPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_NEOFI (Autophagy-related protein 8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.069e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD VLPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_EMENI (Autophagy-related protein 8 OS=Emericella nidulans GN=atg8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.069e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD VLPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_COLLN (Autophagy-related protein 8 OS=Colletotrichum lindemuthianum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.069e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD VLPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CX289244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
ATG8G_ARATH1.576e-1690.70Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
ATG8F_ARATH3.511e-1686.05Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8E_ARATH4.585e-1683.72Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8_PODAN5.069e-1583.72Autophagy-related protein 8 OS=Podospora anserina ... [more]
ATG8_PHANO5.069e-1583.72Autophagy-related protein 8 OS=Phaeosphaeria nodor... [more]
ATG8_PENCW5.069e-1583.72Autophagy-related protein 8 OS=Penicillium chrysog... [more]
ATG8_NEUCR5.069e-1583.72Autophagy-related protein 8 OS=Neurospora crassa G... [more]
ATG8_NEOFI5.069e-1583.72Autophagy-related protein 8 OS=Neosartorya fischer... [more]
ATG8_EMENI5.069e-1583.72Autophagy-related protein 8 OS=Emericella nidulans... [more]
ATG8_COLLN5.069e-1583.72Autophagy-related protein 8 OS=Colletotrichum lind... [more]

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Properties
Property NameValue
Genbank descriptionC02010G10SK IF1 Citrus clementina cDNA clone C02010G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289244 ID=CX289244; Name=CX289244; organism=Citrus clementina; type=EST; length=378bp
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTCCC
ATCGAATTTAAATTATTCGCAATCATCAGTCTGATACCACATAGTTTGAA
CCGGCTTTATCCAAGCATAAAAGGTCATGTAAATAAAAAGCCGGTTTATG
ACCGGCACAAAGCCAGAAAACAGAAACCCTAAATTCAAGATGGGTAGATT
AACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCAGATTATGCTAT
CCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCATC
CTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGTAGGCGGGAGAA
CATTGTCCACAAATATAAAGATTGCCTT
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