CX289245

Overview
NameCX289245
Unique NameCX289245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14735 contig Ccv1_Contig14735:51..459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 2.039e-40
Identity = 79/120 (65.83%), Postives = 95/120 (79.17%), Query Frame = 3
Query:   48 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S S AQL+P+FY +TCP+V   + D +     SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK AAPN NSARGF VID MKAAVE ACPR VSCADILTIAA+++V L+GGP
Sbjct:   25 SISSAQLTPTFYDNTCPSVFTIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAAPNANSARGFPVIDRMKAAVETACPRTVSCADILTIAAQQAVNLAGGP 144          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.933e-40
Identity = 76/118 (64.41%), Postives = 93/118 (78.81%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S AQL+ +FYS TCPN    +   +++A  SD RIGASLIRLHFHDCFV+GCDASILLD T +I SEK A PN NSARGF V+DN+K A+E ACP VVSC+D+L +A+E SV+L+GGP
Sbjct:   28 SSAQLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGP 145          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.322e-39
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 3
Query:   63 QLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            QL+ +FYS TCPN    +   +++AF SD RIGASLIRLHFHDCFVDGCDASILLD + +I SEK A PN NSARGF V+DN+K A+E  CP VVSC+DIL +A+E SV+L+GGP
Sbjct:    1 QLNATFYSGTCPNASAIVRSTIQQAFQSDTRIGASLIRLHFHDCFVDGCDASILLDDSGSIQSEKNAGPNANSARGFNVVDNIKTALENTCPGVVSCSDILALASEASVSLTGGP 115          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.322e-39
Identity = 78/122 (63.93%), Postives = 92/122 (75.41%), Query Frame = 3
Query:   42 EGSPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            + S S AQL P FY  TCP + N I D +     +D RI ASL+RLHFHDCFV GCDASILLD++ +  +EK AAPN NS RGF+VID MKAA+ERACPR VSCADI+TIA++ SV LSGGP
Sbjct:   23 QASNSNAQLRPDFYFRTCPPIFNIIGDTIVNELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNKNSVRGFDVIDRMKAAIERACPRTVSCADIITIASQISVLLSGGP 144          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.322e-39
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 3
Query:   48 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S S AQL+P+FY ++CPNV N + D +     SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGP
Sbjct:   26 SLSDAQLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGP 145          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.726e-39
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 3
Query:   48 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S S AQL+P+FY  +CPNV N + + +     SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF VID MKAAVERACPR VSCAD+LTIAA++SV L+GGP
Sbjct:   26 SLSAAQLTPTFYDRSCPNVTNIVRETIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVERACPRTVSCADMLTIAAQQSVTLAGGP 145          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PERN_ARMRU (Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.846e-39
Identity = 80/120 (66.67%), Postives = 93/120 (77.50%), Query Frame = 3
Query:   48 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S  +AQLSP  Y+ +CPN+L  + D +K A  ++IR+ ASLIRLHFHDCFV+GCDAS+LLD TN   SEK A PN NS RGFEVID +KAAVE ACP VVSCADILT+AA  SV LSGGP
Sbjct:   24 SAVRAQLSPDIYAKSCPNLLQIVRDQVKIALKAEIRMAASLIRLHFHDCFVNGCDASVLLDGTN---SEKLAIPNVNSVRGFEVIDTIKAAVENACPGVVSCADILTLAARDSVYLSGGP 140          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.846e-39
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 3
Query:   42 EGSPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            + S S AQL P FY  TCP+V N I D++     +D RI ASL+RLHFHDCFV GCDASILLD++ +  +EK AAPN NSARGF VID MK ++ERACPR VSCAD+LTIA++ SV LSGGP
Sbjct:   23 QASNSNAQLRPDFYFRTCPSVFNIIGDIIVDELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNANSARGFGVIDRMKTSLERACPRTVSCADVLTIASQISVLLSGGP 144          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.846e-39
Identity = 76/118 (64.41%), Postives = 92/118 (77.97%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S AQL+P+FY ++CP V N + D +     SD RI  S++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF VID MKAAVERACPR VSCAD+LTIAA++SV L+GGP
Sbjct:   29 SDAQLTPTFYDTSCPTVTNIVRDTIVNELRSDPRIAGSILRLHFHDCFVNGCDASILLDNTTSFRTEKDALGNANSARGFPVIDRMKAAVERACPRTVSCADMLTIAAQQSVTLAGGP 146          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.023e-39
Identity = 76/120 (63.33%), Postives = 93/120 (77.50%), Query Frame = 3
Query:   48 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S S AQLSPSFY  TCP V + + + +  A  SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF+VID MKAA+E+ACPR VSCAD+L IAA+ S+ L+GGP
Sbjct:   18 SLSHAQLSPSFYDKTCPQVFDIVTNTIVNALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFDVIDKMKAAIEKACPRTVSCADMLAIAAKESIVLAGGP 137          
The following BLAST results are available for this feature:
BLAST of CX289245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER32_ARATH2.039e-4065.83Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER53_ARATH5.933e-4064.41Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PERA2_ARMRU1.322e-3965.22Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER23_ARATH1.322e-3963.93Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PER1A_ARMRU1.322e-3965.00Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER34_ARATH1.726e-3965.00Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PERN_ARMRU3.846e-3966.67Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 S... [more]
PER3_ARMRU3.846e-3963.93Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PER33_ARATH3.846e-3964.41Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER38_ARATH5.023e-3963.33Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02010G11SK IF1 Citrus clementina cDNA clone C02010G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289245 ID=CX289245; Name=CX289245; organism=Citrus clementina; type=EST; length=409bp
GTTATCTTCTCGCAGCAGCTCTTCTTGTTGCTTTTGTGCTTGAGGGATCA
CCATCTCAAGCTCAACTTTCTCCATCTTTTTATTCTTCCACATGCCCTAA
TGTATTGAACACTATCGAGGATGTGCTTAAGAAAGCTTTCTCGTCCGATA
TCCGGATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTT
GATGGGTGTGATGCATCGATTTTGCTGGACAGCACTAACACCATAGACAG
CGAGAAATTTGCTGCGCCAAATAACAATTCGGCGAGGGGTTTTGAAGTTA
TTGATAACATGAAAGCTGCCGTTGAAAGGGCATGTCCAAGGGTTGTTTCC
TGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTTGCTTTGTCAGG
GGGTCCGTC
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