CX289246

Overview
NameCX289246
Unique NameCX289246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_PYRPY (UTP--glucose-1-phosphate uridylyltransferase OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38
Identity = 75/92 (81.52%), Postives = 83/92 (90.22%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 277
            GFVTRN ARKNP NPTIELGPEFKKVG++LSRFKSIPSI+EL+SLKV+GDVWFGA + LKGKVTI AKSG KLEIPD AV+ NK+INGP DL
Sbjct:  380 GFVTRNSARKNPENPTIELGPEFKKVGSYLSRFKSIPSILELESLKVSGDVWFGAGVVLKGKVTITAKSGVKLEIPDNAVIANKDINGPEDL 471          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_SOLTU (UTP--glucose-1-phosphate uridylyltransferase OS=Solanum tuberosum PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 277
            G+V RN AR NP+NP+IELGPEFKKV NFL RFKSIPSII+LDSLKVTGDVWFG+ +TLKGKVT+AAKSG KLEIPDGAV+ NK+INGP D+
Sbjct:  386 GYVIRNPARSNPSNPSIELGPEFKKVANFLGRFKSIPSIIDLDSLKVTGDVWFGSGVTLKGKVTVAAKSGVKLEIPDGAVIANKDINGPEDI 477          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA2_ARATH (Probable UTP--glucose-1-phosphate uridylyltransferase 2 OS=Arabidopsis thaliana GN=At3g03250 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 75/92 (81.52%), Postives = 84/92 (91.30%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 277
            GFVTRN+AR NP+NP+IELGPEFKKV  FLSRFKSIPSI+ELDSLKV+GDVWFG++I LKGKVT+AAKSG KLEIPD AV+ENK INGP DL
Sbjct:  378 GFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA1_ARATH (UTP--glucose-1-phosphate uridylyltransferase 1 OS=Arabidopsis thaliana GN=At5g17310 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 277
            GFVTRN+AR NP NP IELGPEFKKV +FLSRFKSIPSI+ELDSLKV+GDVWFG+ + LKGKVT+ A +G KLEIPD AVLENK+INGP DL
Sbjct:  379 GFVTRNKARTNPTNPAIELGPEFKKVASFLSRFKSIPSIVELDSLKVSGDVWFGSGVVLKGKVTVKANAGTKLEIPDNAVLENKDINGPEDL 470          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_MUSAC (UTP--glucose-1-phosphate uridylyltransferase OS=Musa acuminata GN=UGPA PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 73/92 (79.35%), Postives = 81/92 (88.04%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 277
            GFV RN+AR NP+NP+IELGPEFKKV NFLSRFKSIPSI+ELDSLKV+GDVWFG  + LKG V+IAAKSG KLEI DGAVLENK INGP D+
Sbjct:  376 GFVIRNKARTNPSNPSIELGPEFKKVANFLSRFKSIPSIVELDSLKVSGDVWFGEGVVLKGNVSIAAKSGVKLEISDGAVLENKVINGPEDI 467          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_ASTPN (UTP--glucose-1-phosphate uridylyltransferase OS=Astragalus penduliflorus GN=UGP PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 277
            G V RN+AR NP NP+IELGPEFKKV NFL RFKSIPSI+ELDSLKV GDVWFG  + LKGKV+I AKSG K+EIPDGAV+ NKEINGP DL
Sbjct:  380 GSVIRNKARTNPENPSIELGPEFKKVSNFLGRFKSIPSIVELDSLKVVGDVWFGTGVILKGKVSIVAKSGVKVEIPDGAVIANKEINGPKDL 471          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_HORVU (UTP--glucose-1-phosphate uridylyltransferase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.647e-35
Identity = 70/92 (76.09%), Postives = 81/92 (88.04%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 277
            G+V RN AR  P+NP+IELGPEFKKV NFL+RFKSIPSI+ELDSLKV+GDV FG+ + LKG VTIAAK+G KLEIPDGAVLENK+INGP D+
Sbjct:  382 GYVIRNPARVKPSNPSIELGPEFKKVANFLARFKSIPSIVELDSLKVSGDVSFGSGVVLKGNVTIAAKAGVKLEIPDGAVLENKDINGPEDI 473          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_MOUSE (UTP--glucose-1-phosphate uridylyltransferase OS=Mus musculus GN=Ugp2 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.495e-19
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            G +T +E R+ P  P ++LG  F KV ++L RF+SIP ++ELD L V+GDV FG N++LKG V I A  G++++IP GAVLENK ++G
Sbjct:  414 GSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 501          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_HUMAN (UTP--glucose-1-phosphate uridylyltransferase OS=Homo sapiens GN=UGP2 PE=1 SV=5)

HSP 1 Score: 94.7449 bits (234), Expect = 1.495e-19
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            G +T +E R+ P  P ++LG  F KV ++L RF+SIP ++ELD L V+GDV FG N++LKG V I A  G++++IP GAVLENK ++G
Sbjct:  414 GSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 501          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_CRIGR (UTP--glucose-1-phosphate uridylyltransferase OS=Cricetulus griseus GN=UGP2 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.495e-19
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            G +T +E R+ P  P ++LG  F KV ++L RF+SIP ++ELD L V+GDV FG N++LKG V I A  G++++IP GAVLENK ++G
Sbjct:  414 GSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 501          
The following BLAST results are available for this feature:
BLAST of CX289246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
UGPA_PYRPY3.204e-3881.52UTP--glucose-1-phosphate uridylyltransferase OS=Py... [more]
UGPA_SOLTU7.138e-3879.35UTP--glucose-1-phosphate uridylyltransferase OS=So... [more]
UGPA2_ARATH7.138e-3881.52Probable UTP--glucose-1-phosphate uridylyltransfer... [more]
UGPA1_ARATH6.042e-3778.26UTP--glucose-1-phosphate uridylyltransferase 1 OS=... [more]
UGPA_MUSAC2.296e-3679.35UTP--glucose-1-phosphate uridylyltransferase OS=Mu... [more]
UGPA_ASTPN1.944e-3577.17UTP--glucose-1-phosphate uridylyltransferase OS=As... [more]
UGPA_HORVU9.647e-3576.09UTP--glucose-1-phosphate uridylyltransferase OS=Ho... [more]
UGPA_MOUSE1.495e-1951.14UTP--glucose-1-phosphate uridylyltransferase OS=Mu... [more]
UGPA_HUMAN1.495e-1951.14UTP--glucose-1-phosphate uridylyltransferase OS=Ho... [more]
UGPA_CRIGR1.495e-1951.14UTP--glucose-1-phosphate uridylyltransferase OS=Cr... [more]

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Properties
Property NameValue
Genbank descriptionC02010G12SK IF1 Citrus clementina cDNA clone C02010G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289246 ID=CX289246; Name=CX289246; organism=Citrus clementina; type=EST; length=419bp
TGGATTTGTTACTCGGAATGAAGCTAGAAAAAACCCTGCAAATCCAACTA
TTGAACTGGGACCTGAATTTAAGAAGGTTGGCAACTTTTTGAGCCGATTC
AAGTCTATTCCTAGTATCATCGAGCTTGATAGCCTTAAGGTGACCGGTGA
CGTATGGTTTGGTGCTAATATTACCCTCAAGGGGAAAGTGACTATTGCTG
CCAAATCTGGGGAGAAACTGGAAATTCCTGATGGAGCTGTACTTGAAAAC
AAGGAGATCAATGGCCCCGGGGATCTGTAAGGAACATGCTGTAGATTACT
TGTCGAAGAGGTCTGCTCAGTGCTTATCTTGAACCTTGAGGATCGGAGTC
TTGTTTTGCTGGATGTTGGATTTCATTCCAAATTTTATTTTGTATTAATT
TTTTATTTCATCGATCTCT
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