CX289249

Overview
NameCX289249
Unique NameCX289249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11894 contig Ccv1_Contig11894:818..1218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 1.730e-60
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 3
Query:    3 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILE 398
            RTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL GK+ID+Y+TQD++EVARDFTYIDD+VKGCVGALDTA             AQLRVYNLGNTSPVPVGRLVSILE
Sbjct:  255 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILE 386          
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.853e-54
Identity = 101/132 (76.52%), Postives = 111/132 (84.09%), Query Frame = 3
Query:    3 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILE 398
            RTDQPASLYAATKKAGE IAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GKTI V+++ D   VARDFTYIDD+VKGC+GALDTA            PA  R+YNLGNTSPVPV +LV+ILE
Sbjct:  239 RTDQPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILE 370          
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.675e-53
Identity = 99/132 (75.00%), Postives = 111/132 (84.09%), Query Frame = 3
Query:    3 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILE 398
            +TDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GK+I ++++ +   VARDFTYIDD+VKGC+ ALDTA            PAQLRV+NLGNTSPVPV  LV ILE
Sbjct:  240 KTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILE 371          
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 5.960e-53
Identity = 100/132 (75.76%), Postives = 110/132 (83.33%), Query Frame = 3
Query:    3 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILE 398
            RTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK I +++  +   VARDFTYIDD+VKGC+GALDTA             AQLRV+NLGNTSPVPV  LVSILE
Sbjct:  235 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILE 366          
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.734e-52
Identity = 99/132 (75.00%), Postives = 110/132 (83.33%), Query Frame = 3
Query:    3 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILE 398
            RTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK I +++  +   VARDFTYIDD+VKGC+GALDTA             AQLRV+NLGNTSPVPV  LV+ILE
Sbjct:  234 RTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILE 365          
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.540e-48
Identity = 90/132 (68.18%), Postives = 106/132 (80.30%), Query Frame = 3
Query:    3 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILE 398
            RTDQPASLYAATKKAGEEI HTYNHIYGLA+TGLRFFTVYGPWGRPDMAYF FT++ILQGK I +Y+ ++  ++ARDFTYIDD+VKGC+G+LD++             A  R++NLGNTSPV V  LV ILE
Sbjct:  231 RTDQPASLYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILE 362          
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.759e-31
Identity = 70/136 (51.47%), Postives = 87/136 (63.97%), Query Frame = 3
Query:    9 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXP-----AQLRVYNLGNTSPVPVGRLVSILEN 401
            D P SLYAATKKA E +AHTY+H+YGL  TGLRFFTVYGPWGRPDMA F FTK +L+GK+IDVY   +  ++ RDFTYIDD+ +  +   D                    A  RVYN+GN+SPV +   +  LE+
Sbjct:  145 DHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALED 277          
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.281e-28
Identity = 67/137 (48.91%), Postives = 83/137 (60.58%), Query Frame = 3
Query:    9 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXP------AQLRVYNLGNTSPVPVGRLVSILEN 401
            D P SLYAATKK+ E +AHTY+H+Y L  TGLRFFTVYGPWGRPDMA F FTK I+  + IDVY   +   + RDFTY+DD+V+  +  L               P      A  +VYN+GN SPV +   V  +EN
Sbjct:  145 DHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVE-AISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIEN 277          
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.135e-26
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 3
Query:    3 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILE 398
            R D+P SLYA+TK++ E +AH Y+H+YG+ + GLRFFTVYG +GRPDMAYF F K+IL GK I+VY   +   + RDFTYI DVV G + A+                    ++NLGN+ PV +   + ++E
Sbjct:  149 RVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPDMAYFKFAKNILLGKEIEVYNYGN---MERDFTYISDVVDGILRAI-------------KKDFDYEIFNLGNSKPVKLMYFIELIE 264          
BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.442e-22
Identity = 58/138 (42.03%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    3 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV------GALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILE 398
            R D+P +LYAATKK+ E +AH+Y H+Y +  T  RFFTVYGPWGRPDMA F F   I  G+ ID+Y    +  ++RDFTYIDD+V+  V       + +               A  RV N G   PV +   V  +E
Sbjct:  144 RADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFFTVYGPWGRPDMALFKFVDAIHNGRPIDIY---GEGRMSRDFTYIDDLVESIVRLSHVPPSEENRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVE 278          
The following BLAST results are available for this feature:
BLAST of CX289249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GAE6_ARATH1.730e-6084.09UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
GAE5_ARATH1.853e-5476.52UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
GAE4_ARATH2.675e-5375.00UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE2_ARATH5.960e-5375.76UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE3_ARATH1.734e-5275.00UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE1_ARATH7.540e-4868.18UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
YCL2_ECO113.759e-3151.47Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
CAPI_STAAU2.281e-2848.91Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
Y1055_METJA2.135e-2645.45Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
LPSL_RHIME2.442e-2242.03UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionC02010H03SK IF1 Citrus clementina cDNA clone C02010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289249 ID=CX289249; Name=CX289249; organism=Citrus clementina; type=EST; length=401bp
ACAGAACCGACCAGCCCGCGAGTTTGTACGCGGCGACTAAGAAAGCCGGG
GAGGAAATCGCCCACACTTACAACCATATTTACGGTCTTGCCCTCACGGG
CCTAAGGTTCTTCACCGTGTACGGCCCCTGGGGGAGACCCGACATGGCTT
ACTTCTTCTTCACCAAAGATATCTTACAGGGCAAAACCATTGACGTGTAC
AAGACGCAAGATGACAGGGAGGTGGCGCGTGACTTCACATACATAGATGA
CGTAGTGAAGGGCTGTGTCGGGGCGTTGGACACGGCGGGGAAGAGCACGG
GGAGCAGGGGGAAGAAGCGGGGCCCCGCTCAGCTGAGAGTTTACAATCTC
GGAAACACGTCGCCAGTGCCCGTGGGGAGATTGGTGTCGATATTGGAGAA
T
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