CX289254

Overview
NameCX289254
Unique NameCX289254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289254_ssr419 microsatellite CX289254_ssr419:419..430. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11637 contig Ccv1_Contig11637:1021..1542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPA_PEA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.205e-53
Identity = 98/113 (86.73%), Postives = 108/113 (95.58%), Query Frame = 1
Query:   10 GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRGVLP 348
            GP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIER+RKL+L+HD+ATEKELKD EKEVRKEVD+AIAKAK+SPMP+PS+LF+NVYVKGYGVE FG DRKEVR  LP
Sbjct:  285 GPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKDSPMPDPSDLFSNVYVKGYGVEAFGVDRKEVRVTLP 397          
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPA1_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At1g59900 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 2.205e-53
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 1
Query:    7 RGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRGVLP 348
            +GP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERI+KL+L+HDLATEKELKD+EKE+RKEVDDAIAKAK+ PMPEPSELFTNVYVKG+G E FG DRKEV+  LP
Sbjct:  276 KGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKDCPMPEPSELFTNVYVKGFGTESFGPDRKEVKASLP 389          
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.094e-52
Identity = 97/113 (85.84%), Postives = 106/113 (93.81%), Query Frame = 1
Query:   10 GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRGVLP 348
            GP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDP+ERIR LILAH++ATE ELKDIEKE RK VD+AIAKAKESPMP+PSELFTNVYVKG+GVE +GADRKE+R  LP
Sbjct:  279 GPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPVERIRSLILAHNIATEAELKDIEKENRKVVDEAIAKAKESPMPDPSELFTNVYVKGFGVEAYGADRKELRATLP 391          
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPA2_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.479e-49
Identity = 92/113 (81.42%), Postives = 105/113 (92.92%), Query Frame = 1
Query:   10 GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRGVLP 348
            GP+ILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQ RDPIER+RKL+L HD+ATEKELKD+EKE+RKEVDDA+A+AKESP+P+ SELFTN+YVK  GVE FGADRKE++  LP
Sbjct:  281 GPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELKDMEKEIRKEVDDAVAQAKESPIPDASELFTNMYVKDCGVESFGADRKELKVTLP 393          
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPA_DICDI (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.630e-27
Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   10 GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVK 291
            GP+ILEMDTYRY GHSMSDPG TYRTR+E++ VRQ RDPIE IR++IL + +ATE +L  IE+ VR E++ A  KA  +P+P+  ELFTNVY++
Sbjct:  269 GPIILEMDTYRYVGHSMSDPGITYRTREEVNHVRQTRDPIENIRQIILDNKIATEDQLAAIEETVRDEMEKASEKAIAAPLPQARELFTNVYLQ 362          
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.151e-24
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    7 RGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGA 318
            +GP+++EM TYRYHGHSMSDPG++YRTR+EI  VR+ RDPI   +  I+   LATE+ELK I+KEVRKEVD+A+  A    +  P  L+ ++Y      E+ GA
Sbjct:  271 KGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPEALYADIYHNTPAQEIRGA 374          
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPAT_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.180e-22
Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    7 RGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGAD 321
            +GP+++E+ TYRYHGHSMSDPG +YRTR+EI  VR +RDPI  ++  ++   LAT +ELK+I  EVRKE+DDA   A   P P   EL  ++Y      EV GA+
Sbjct:  275 KGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKRDPIIILQDRMVNSKLATVEELKEIGAEVRKEIDDAAQFATTDPEPHLEELGHHIYSSDSSFEVRGAN 379          
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPA_SMIMA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial (Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.013e-22
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    7 RGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADR 324
            +GPM++E+ TYRYHGHSMSDPG +YRTR+EI  VR + DPI  ++  ++ ++LA+ +ELK+I+ EVRKE++DA   A   P P   EL  ++Y +    EV GA++
Sbjct:  250 KGPMLMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNNNLASIEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSRDPPFEVRGANQ 355          
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPA_SCHPO (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=pda1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.013e-22
Identity = 51/96 (53.12%), Postives = 70/96 (72.92%), Query Frame = 1
Query:   13 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSE--LFTNVYVKG 294
            P+++E  TYRY GHSMSDPG+TYR+R+E+  VR  RDPIE ++K I+   +A   ELK+IEK +R  VD+ +  A+ESP P+P E  LF++VYV G
Sbjct:  296 PLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKHIMEWGVANANELKNIEKRIRGMVDEEVRIAEESPFPDPIEESLFSDVYVAG 391          
BLAST of CX289254 vs. ExPASy Swiss-Prot
Match: ODPA_PIG (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (Fragment) OS=Sus scrofa GN=PDHA1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    7 RGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADR 324
            +GP+++E+ TYRYHGHSMSDPG +YRTR+EI  VR + DPI  ++  ++  +LA+ +ELK+I+ EVRKE++DA   A   P P   EL  ++Y      EV GA++
Sbjct:  276 KGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYCNDPPFEVRGANQ 381          
The following BLAST results are available for this feature:
BLAST of CX289254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ODPA_PEA2.205e-5386.73Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA1_ARATH2.205e-5385.96Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_SOLTU7.094e-5285.84Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA2_ARATH1.479e-4981.42Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_DICDI4.630e-2761.70Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_CAEEL2.151e-2451.92Probable pyruvate dehydrogenase E1 component subun... [more]
ODPAT_HUMAN1.180e-2250.48Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SMIMA2.013e-2248.11Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SCHPO2.013e-2253.13Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PIG9.991e-2247.17Pyruvate dehydrogenase E1 component subunit alpha,... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02010H08SK IF1 Citrus clementina cDNA clone C02010H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289254 ID=CX289254; Name=CX289254; organism=Citrus clementina; type=EST; length=522bp
GGCACGAGGGGACCTATGATACTTGAAATGGACACATACAGGTATCATGG
TCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAGATCA
GTGGTGTGAGACAGGAGCGTGATCCAATTGAAAGAATAAGAAAGTTAATA
TTAGCCCATGACCTAGCGACAGAGAAAGAGCTAAAGGACATTGAGAAGGA
AGTAAGAAAAGAAGTAGATGATGCCATTGCCAAAGCCAAGGAGAGTCCCA
TGCCAGAGCCTTCTGAACTCTTCACAAATGTGTATGTGAAAGGTTATGGA
GTTGAGGTATTTGGAGCAGACAGGAAAGAAGTTAGAGGCGTGCTTCCATA
AATTTGAACTTGTCTGAAGAGTTTTGAAACTGAGCAAAACCTTACAACCG
TAAACCTTGTAAAAAGGTACAAACAAACAAGCAATAAGAATTTGGAGGGA
AGATGGTCATCTCTTCCTGGCTATTGATTGTGATTTTCGTCCTCTAGTCG
TATAGAATTTTGATTCTTCTCA
back to top