CX289256

Overview
NameCX289256
Unique NameCX289256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15064 contig Ccv1_Contig15064:417..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289256 vs. ExPASy Swiss-Prot
Match: PSL2_HUMAN (Signal peptide peptidase-like 2A OS=Homo sapiens GN=SPPL2A PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   74 SAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWV 484
            + V+FV++    +V+LY     W + +++ +FCI     L  CL AL+ +     G+  I          L + ++  CIA AVVWA++R    +AWI QDILGIA  + +++ + +PN K   +LL    +YD+F+V
Sbjct:  222 TVVIFVVICCVMMVLLY-FFYKWLVYVMIAIFCIASAMSLYNCLAALIHKI--PYGQCTIACRGKNMEVRL-IFLSGLCIAVAVVWAVFRNEDRWAWILQDILGIAFCLNLIKTLKLPNFKSCVILLGLLLLYDVFFV 355          
BLAST of CX289256 vs. ExPASy Swiss-Prot
Match: PSL1_HUMAN (Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 2
Query:   56 VDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVI----LFCIGGVEGLQTCLVALLSRW-FRRAGESFIKVPFFGAVSHLT-LAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWV 484
            VD+      +FV++    LV+LY     +F +LLV     +FC+    GL +CL   + R  F +       +P+F        L +  FC+A +VVW ++R    +AW+ QD LGIA  + +L+ + +P  K  T+LL   F+YDIF+V
Sbjct:  219 VDVTPVMTCVFVVMCCSMLVLLY-----YFYDLLVYVVIGIFCLASATGLYSCLAPCVRRLPFGKCRIPNNSLPYFHKRPQARMLLLALFCVAVSVVWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKACTLLLLVLFLYDIFFV 363          
BLAST of CX289256 vs. ExPASy Swiss-Prot
Match: PSL2_MOUSE (Signal peptide peptidase-like 2A OS=Mus musculus GN=Sppl2a PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14
Identity = 45/138 (32.61%), Postives = 75/138 (54.35%), Query Frame = 2
Query:   74 SAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWV 484
            + V+FV++    +V+LY     W + +++ +FCI     L  CL AL+ R     G+  I          L + ++  CI+ AVVWA++R    +AWI QDILGIA  + +++ + +PN     +LL    +YD+F+V
Sbjct:  226 TVVVFVVICCIMIVLLY-FFYRWLVYVMIAIFCIASSMSLYNCLSALIHRM--PCGQCTILCCGKNIKVSL-IFLSGLCISVAVVWAVFRNEDRWAWILQDILGIAFCLNLIKTMKLPNFMSCVILLGLLLIYDVFFV 359          
BLAST of CX289256 vs. ExPASy Swiss-Prot
Match: PSL1_CHICK (Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.827e-13
Identity = 50/150 (33.33%), Postives = 83/150 (55.33%), Query Frame = 2
Query:   56 VDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFI---KVPFFGA---VSHLTLAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWV 484
            VD+      +FV++    LV+LY    +  + +++ +FC+    GL +CL   + R+    G+  I    +P+F     V  L LAV  FCI+ +VVW ++R    +AW+ QD LGIA  + +L+ + +P  K  T+LL   F+YD+F+V
Sbjct:  215 VDVTPIMICVFVVMCCSMLVLLYFFYDH-LVYVIIGIFCLAASIGLYSCLSPFVRRF--PLGKCRIPDNNLPYFHKRPQVRILLLAV--FCISVSVVWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKGCTLLLLVLFVYDVFFV 359          
BLAST of CX289256 vs. ExPASy Swiss-Prot
Match: PSL1_RAT (Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.386e-13
Identity = 46/160 (28.75%), Postives = 81/160 (50.62%), Query Frame = 2
Query:   14 DEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRW-FRRAGESFIKVPFFGAVSHLT-LAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWV 484
            D++P+ +       VD+      +FV++    LV+LY       + +++ +FC+    GL +CL   + +  F         +P+F        L +  FC+  +VVW ++R    +AW+ QD LGIA  + +L+ + +P  K  T+LL   F+YDIF+V
Sbjct:  201 DDVPEKQE---DEAVDVTPVMICVFVVMCCFMLVLLYYFYDR-LVYVIIGIFCLASSTGLYSCLAPCVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGVFRNEDQWAWVLQDTLGIAFCLYMLRTIRLPTFKACTLLLLVLFVYDIFFV 356          
BLAST of CX289256 vs. ExPASy Swiss-Prot
Match: PSL1_MOUSE (Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.116e-13
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   56 VDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRW-FRRAGESFIKVPFFGAVSHLT-LAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWV 484
            VD+      +FV++    LV+LY       + +++ +FC+    GL +CL   + +  F         +P+F        L +  FC+  +VVW I+R    +AW+ QD LGIA  + +L+ + +P  K  T+LL   F+YDIF+V
Sbjct:  212 VDVTPVMICVFVVMCCFMLVLLYYFYDR-LVYVIIGIFCLASSTGLYSCLAPFVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGIFRNEDQWAWVLQDTLGIAFCLYMLKTIRLPTFKACTLLLLVLFIYDIFFV 356          
The following BLAST results are available for this feature:
BLAST of CX289256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSL2_HUMAN4.347e-1533.33Signal peptide peptidase-like 2A OS=Homo sapiens G... [more]
PSL1_HUMAN4.347e-1533.33Signal peptide peptidase-like 2B OS=Homo sapiens G... [more]
PSL2_MOUSE8.199e-1432.61Signal peptide peptidase-like 2A OS=Mus musculus G... [more]
PSL1_CHICK1.827e-1333.33Signal peptide peptidase-like 2B OS=Gallus gallus ... [more]
PSL1_RAT2.386e-1328.75Signal peptide peptidase-like 2B OS=Rattus norvegi... [more]
PSL1_MOUSE3.116e-1330.82Signal peptide peptidase-like 2B OS=Mus musculus G... [more]
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Properties
Property NameValue
Genbank descriptionC02010H10SK IF1 Citrus clementina cDNA clone C02010H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289256 ID=CX289256; Name=CX289256; organism=Citrus clementina; type=EST; length=485bp
GGAGGATGCTGTAGACGAAATTCCAGATGCCAAAGCAGTAGGTGTTAGTG
GTGTTGTGGACATTAACACAGCATCTGCTGTCCTATTCGTTTTAGTTGCT
TCATGCTTCTTGGTCATGCTTTACAAACTTATGTCAAACTGGTTCCTTGA
GCTATTGGTCATTCTTTTCTGCATAGGTGGTGTAGAGGGCTTGCAAACTT
GCTTGGTTGCTTTATTATCAAGGTGGTTCAGACGTGCTGGAGAATCATTC
ATCAAAGTACCTTTCTTTGGAGCTGTCTCTCATCTTACTTTGGCTGTTAC
TCCATTCTGCATAGCATTTGCTGTTGTGTGGGCCATTTATCGCAAGGTCT
CCTTTGCATGGATTGGTCAAGATATTCTTGGAATTGCGCTGATAATAACA
GTCCTGCAAATTGTCCATATTCCTAATCTCAAGGTGGGTACAGTTCTTCT
CAGCTGTGCCTTCATGTACGACATCTTTTGGGTAT
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