CX289258

Overview
NameCX289258
Unique NameCX289258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KIF6_DICDI (Kinesin-related protein 6 OS=Dictyostelium discoideum GN=kif6 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.503e-43
Identity = 109/231 (47.19%), Postives = 139/231 (60.17%), Query Frame = 1
Query:    4 ESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL--SKSGNTKK-----------------DQGQNS--LIPINKDTSSASSIPVSADVEDVYEPQQDVKVVDTGRRATEKETLSYIPTVDYDKQQ 633
            +SSRSHAILQ+++K               N    K+ GK SFIDLAGSERG+DT DND+QTR EGA+INKSLLALKECIRALD    H PFR S LT+VL+DSFVGNS+TVMI+ ISPN  S EHTLNTLRYADRVK L  S+S + KK                  Q  N   LIP    T++ ++  +++    + +  Q V  +   ++  +++  S IP     +QQ
Sbjct:  652 DSSRSHAILQISLK---------------NIKTNKLHGKFSFIDLAGSERGSDTYDNDKQTRKEGADINKSLLALKECIRALDQSSKHTPFRQSTLTQVLKDSFVGNSRTVMIANISPNQSSSEHTLNTLRYADRVKELGTSESNSNKKPVATYNIPAPLPPPDHLKQNFNDPILIPSTTTTTTTTATAINSQQPIIQQTSQPVSKI---KQPVKQQQESQIPQTPQQQQQ 864          
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KIF24_MOUSE (Kinesin-like protein KIF24 OS=Mus musculus GN=Kif24 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.519e-40
Identity = 99/220 (45.00%), Postives = 128/220 (58.18%), Query Frame = 1
Query:    4 ESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSK--------------SGNTKKDQGQNSLIPINKDTSSASSIPVSADVEDVYEPQQDVKVVDTGRRATEKETLSYIPTVDY 621
            +SSRSHAI+Q+ IK                +S  +  G+ISFIDLAGSER AD  D+DRQT++EGAEIN+SLLALKECIRALD +  H PFR SKLT+VL+DSF+GN+KT MI+ ISP+  + EHTLNTLRYADRVK L K              S N    + Q+S + +  D  S   + +          QQ + V     +       S++P V +
Sbjct:  419 DSSRSHAIIQIQIK----------------DSAKRTFGRISFIDLAGSERAADARDSDRQTKMEGAEINQSLLALKECIRALDQEHTHTPFRQSKLTQVLKDSFIGNAKTCMIANISPSHIATEHTLNTLRYADRVKELKKGVKCCASATSQNQTSANASPKRIQSSPVTLPGDKCSPKKVKLGL--------QQSLTVAPGPTKVKAHPLASHVPNVPF 614          
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KIF24_HUMAN (Kinesin-like protein KIF24 OS=Homo sapiens GN=KIF24 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.519e-40
Identity = 93/181 (51.38%), Postives = 119/181 (65.75%), Query Frame = 1
Query:    4 ESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSK--------------SGNTKKDQGQNSLIPINKDTSSASSI 504
            +SSRSHA++Q+ IK                +S  +  G+ISFIDLAGSER AD  D+DRQT++EGAEIN+SLLALKECIRALD +  H PFR SKLT+VL+DSF+GN+KT MI+ ISP+  + EHTLNTLRYADRVK L K              SGN+   + Q+S   +++D  S   +
Sbjct:  424 DSSRSHAVIQIQIK----------------DSAKRTFGRISFIDLAGSERAADARDSDRQTKMEGAEINQSLLALKECIRALDQEHTHTPFRQSKLTQVLKDSFIGNAKTCMIANISPSHVATEHTLNTLRYADRVKELKKGIKCCTSVTSRNRTSGNSSPKRIQSSPGALSEDKCSPKKV 588          
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KIF2C_MOUSE (Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2c PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.843e-40
Identity = 89/174 (51.15%), Postives = 117/174 (67.24%), Query Frame = 1
Query:    7 SSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIPINKDTSSASSIPVSADVE 525
            SSRSHA  Q+ ++                 ++G++ GK S +DLAG+ERGADT+  DRQTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS       +Q       + + +S+ +S+  + + E
Sbjct:  463 SSRSHACFQILLR-----------------TKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQPVQMETEVMEASSNGTSLTGNEEEE 619          
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KIF2C_CRIGR (Kinesin-like protein KIF2C OS=Cricetulus griseus GN=KIF2C PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.286e-39
Identity = 91/180 (50.56%), Postives = 118/180 (65.56%), Query Frame = 1
Query:    7 SSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIPINKDTSSASSIPVSADVEDVYEPQ 543
            SSRSHA  Q+ ++                 ++G++ GK S +DLAG+ERGADT+  DRQTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS       +Q         + +S+ +S+ V+   E+    Q
Sbjct:  461 SSRSHACFQILLR-----------------AKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHSGLSGEQPIQMETEEMEASSNGTSLAVNFKEEEELSSQ 623          
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KIF2A_XENLA (Kinesin-like protein KIF2A OS=Xenopus laevis GN=kif2a PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.679e-39
Identity = 87/142 (61.27%), Postives = 105/142 (73.94%), Query Frame = 1
Query:    7 SSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKS 429
            SSRSHA+ Q+ ++K                 +GK+ GK S IDLAG+ERGADT+  DRQTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYA+RVK L  S
Sbjct:  407 SSRSHAVFQIILRK-----------------KGKMHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKELDPS 531          
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KIF2C_MACFA (Kinesin-like protein KIF2C OS=Macaca fascicularis GN=KIF2C PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39
Identity = 86/149 (57.72%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    7 SSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQ 450
            SSRSHA  Q+ ++                 ++G++ GK S +DLAG+ERGADT+  DRQTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS       +Q
Sbjct:  413 SSRSHACFQILLR-----------------AKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQ 544          
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KIF2C_HUMAN (Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39
Identity = 86/149 (57.72%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    7 SSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQ 450
            SSRSHA  Q+ ++                 ++G++ GK S +DLAG+ERGADT+  DRQTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS       +Q
Sbjct:  467 SSRSHACFQIILR-----------------AKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQ 598          
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KI10A_DROME (Kinesin-like protein Klp10A OS=Drosophila melanogaster GN=Klp10A PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.740e-39
Identity = 86/139 (61.87%), Postives = 100/139 (71.94%), Query Frame = 1
Query:    7 SSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 420
            SSRSHA+ Q+ ++                +   K+ GK SFIDLAG+ERG DT+  DRQTR+EGAEINKSLLALKECIRAL     H+PFR SKLT+VLRDSF+G  SKT MI+ ISP + SCEHTLNTLRYADRVK L
Sbjct:  487 SSRSHAVFQIVLRP---------------QGSTKIHGKFSFIDLAGNERGVDTSSADRQTRMEGAEINKSLLALKECIRALGKQSAHLPFRVSKLTQVLRDSFIGEKSKTCMIAMISPGLSSCEHTLNTLRYADRVKEL 610          
BLAST of CX289258 vs. ExPASy Swiss-Prot
Match: KIF2A_RAT (Kinesin-like protein KIF2A OS=Rattus norvegicus GN=Kif2a PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.380e-39
Identity = 85/140 (60.71%), Postives = 105/140 (75.00%), Query Frame = 1
Query:    7 SSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLS 423
            SSRSHA+ Q+ +++                 +GK+ GK S IDLAG+ERGADT+  DRQTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYA+RVK L+
Sbjct:  431 SSRSHAVFQIILRR-----------------KGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKELT 553          
The following BLAST results are available for this feature:
BLAST of CX289258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
KIF6_DICDI2.503e-4347.19Kinesin-related protein 6 OS=Dictyostelium discoid... [more]
KIF24_MOUSE1.519e-4045.00Kinesin-like protein KIF24 OS=Mus musculus GN=Kif2... [more]
KIF24_HUMAN1.519e-4051.38Kinesin-like protein KIF24 OS=Homo sapiens GN=KIF2... [more]
KIF2C_MOUSE9.843e-4051.15Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2... [more]
KIF2C_CRIGR1.286e-3950.56Kinesin-like protein KIF2C OS=Cricetulus griseus G... [more]
KIF2A_XENLA1.679e-3961.27Kinesin-like protein KIF2A OS=Xenopus laevis GN=ki... [more]
KIF2C_MACFA2.864e-3957.72Kinesin-like protein KIF2C OS=Macaca fascicularis ... [more]
KIF2C_HUMAN2.864e-3957.72Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2... [more]
KI10A_DROME3.740e-3961.87Kinesin-like protein Klp10A OS=Drosophila melanoga... [more]
KIF2A_RAT6.380e-3960.71Kinesin-like protein KIF2A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC02011A01SK IF1 Citrus clementina cDNA clone C02011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289258 ID=CX289258; Name=CX289258; organism=Citrus clementina; type=EST; length=649bp
GAGGAATCTTCTAGGTCACATGCTATTTTGCAACTTGCTATTAAGAAGCA
CATTGAAGTAAAAGAATCCTTCAGGCGGAACAATGATGGCAATGAGTCTA
GAGGGAAGGTTATTGGAAAGATTTCTTTCATTGATCTGGCTGGGAGTGAA
AGAGGTGCCGACACCACTGATAACGACCGTCAAACCAGGATTGAAGGTGC
AGAAATCAACAAGAGCCTCTTGGCTCTTAAGGAGTGTATCCGTGCTCTGG
ACAATGACCAGATCCATATCCCATTTCGTGGGAGCAAACTCACAGAAGTG
CTCCGCGACTCTTTTGTTGGGAATTCAAAGACTGTTATGATTTCCTGCAT
ATCACCTAATGTAGGATCATGTGAGCATACACTCAATACTTTGAGATATG
CTGACAGGGTTAAAAGTCTCTCAAAAAGTGGGAACACAAAAAAGGATCAA
GGTCAAAATTCATTGATACCAATTAATAAAGACACTTCATCTGCTTCTTC
TATCCCTGTTTCTGCTGATGTGGAGGATGTTTATGAACCACAACAAGATG
TGAAAGTGGTGGATACGGGTAGAAGAGCCACTGAAAAGGAAACTTTATCT
TACATTCCTACTGTTGATTATGACAAACAGCAATCAAGCTTTTCATCTG
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