CX289259

Overview
NameCX289259
Unique NameCX289259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig184 contig Ccv1_Contig184:1..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289259 vs. ExPASy Swiss-Prot
Match: SUFE_ARATH (SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.078e-47
Identity = 88/107 (82.24%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:  235 IQPVEDLPPKLQEIVQLFQSVQEPKAKYEQLLFYGKNLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKVTPD 555
            +QP+E+LPPKLQEIV+LFQSVQEPKAKYEQL+FYGKNL PLD++FKTRENKVEGCVSQVWVRA+ D+++NVVYEADSDSVLTKGLAALLV+GLS RPV EI+++TPD
Sbjct:   77 LQPIEELPPKLQEIVKLFQSVQEPKAKYEQLMFYGKNLTPLDSQFKTRENKVEGCVSQVWVRAFFDEERNVVYEADSDSVLTKGLAALLVKGLSGRPVPEILRITPD 183
[Close]
BLAST of CX289259 vs. ExPASy Swiss-Prot
Match: Y1419_SYNY3 (Uncharacterized sufE-like protein slr1419 OS=Synechocystis sp. (strain PCC 6803) GN=slr1419 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:  253 LPPKLQEIVQLFQSVQEPKAKYEQLLFYGKNLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKVTPD 555
            LPP L +IV+ FQ   +PK +YEQLL+YGK L+P+    K   NKV+GCVSQV++ A L+D K V+Y+ DSD+ L KGL ALL+QGL+     EIV++TPD
Sbjct:   18 LPPNLAKIVERFQRHTDPKKRYEQLLWYGKKLEPMMEEGKIAANKVQGCVSQVYITADLEDGK-VMYQGDSDAQLVKGLVALLIQGLNGLTPTEIVELTPD 117
The following BLAST results are available for this feature:
BLAST of CX289259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SUFE_ARATH2.078e-4782.24SufE-like protein, chloroplastic OS=Arabidopsis th... [more]
Y1419_SYNY34.661e-2354.46Uncharacterized sufE-like protein slr1419 OS=Synec... [more]
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Properties
Property NameValue
Genbank descriptionC02011A02SK IF1 Citrus clementina cDNA clone C02011A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289259 ID=CX289259; Name=CX289259; organism=Citrus clementina; type=EST; length=556bp
TGCTCCGTCTTTTGAGCGTTACGGTGGGGTGTCCGTTTCTCTCTCGATTG
CTCTGGCTCTCTAGCAATGGCTTCGTCATCAATCTCCTCTTGTCTTCGCT
TATTCACAACCAGATCATTCCTTTCACCAAAACCCAGCAAAAATCTCTCT
TTCTTTTACAAACCCACAAGCTTCGCCAAAAACCCACTCTCAAAATCACT
CGTCGCAGTCTCATCATCAACCTCCACGTCACCAATACAGCCCGTCGAAG
ACCTCCCGCCAAAGCTTCAAGAAATCGTCCAGCTCTTTCAGTCAGTGCAA
GAACCCAAAGCCAAGTACGAGCAGCTACTGTTCTACGGAAAAAACTTGAA
ACCCCTCGATACCCGGTTCAAAACGAGGGAGAACAAAGTGGAAGGCTGCG
TTTCTCAGGTCTGGGTCAGGGCTTATCTTGATGACCAAAAGAACGTTGTG
TACGAAGCTGATTCTGATTCCGTTTTGACCAAAGGATTGGCGGCTCTGCT
TGTTCAAGGCTTGTCTAATAGGCCTGTAGAGGAGATTGTGAAAGTTACGC
CTGATT
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