CX289260

Overview
NameCX289260
Unique NameCX289260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length253
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.794e-40
Identity = 73/79 (92.41%), Postives = 78/79 (98.73%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYMEARP+EEGLAEAID+GRIGPRDDPK RSKIL+EE+GWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN+I
Sbjct:  582 NKHNRLYMEARPMEEGLAEAIDEGRIGPRDDPKNRSKILAEEYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEI 660          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_CHLKE (Elongation factor 2 OS=Chlorella kessleri PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.133e-34
Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP+E+GLAEAID+G+IGPRDDPK RSKILSEEFGWDK+LAKKI  FGP+TTGPNMV D+ KGVQYLN+I
Sbjct:  584 NKHNRLYMQARPMEDGLAEAIDEGKIGPRDDPKVRSKILSEEFGWDKELAKKILAFGPDTTGPNMVTDITKGVQYLNEI 662          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.762e-26
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM A PL +GL + I++G++ PRDDPK RS +L +++G+DK+ A KIWCFGPETTGPN++VD+  G+QYL +I
Sbjct:  571 NKHNRLYMTAEPLPDGLTDDIEEGKVSPRDDPKERSNLLHDKYGFDKNAAMKIWCFGPETTGPNIMVDVTTGIQYLTEI 649          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_SACCA (Elongation factor 2 OS=Saccharomyces castellii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.031e-25
Identity = 47/79 (59.49%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A P+EE ++ AI+ G+I PRDD KAR++++++EFGWD   A+KIWCFGP+  GPN+VVD  K VQYLN+I
Sbjct:  581 NKHNRIYLKAEPIEEEVSLAIESGKINPRDDLKARARVMADEFGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_KLULA (Elongation factor 2 OS=Kluyveromyces lactis GN=EFT1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.981e-25
Identity = 47/79 (59.49%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A+P++E ++ AI+ G+I PRDD KAR++I+++EFGWD   A+KIWCFGP+  GPN+VVD  K VQYLN+I
Sbjct:  581 NKHNRIYLKAQPIDEEVSLAIEGGKINPRDDFKARARIMADEFGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.001e-24
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D   A+KIWCFGPE TGPN++VD  KGVQYLN+I
Sbjct:  583 NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEI 661          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_CANGA (Elongation factor 2 OS=Candida glabrata GN=EFT1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.613e-24
Identity = 45/79 (56.96%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A P++E ++ AI+ G+I PRDD KAR++++++E+GWD   A+KIWCFGP+  GPN+VVD  K VQYLN+I
Sbjct:  581 NKHNRIYLKAEPMDEEVSLAIEQGKINPRDDFKARARVMADEYGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_ASHGO (Elongation factor 2 OS=Ashbya gossypii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.613e-24
Identity = 45/79 (56.96%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A+P++E ++ AI+ G+I PRDD KAR++++++E+GWD   A+KIWCFGP+  GPN+VVD  K VQYLN+I
Sbjct:  581 NKHNRIYLKAQPIDEEVSLAIEGGKINPRDDFKARARVMADEYGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_SACKL (Elongation factor 2 OS=Saccharomyces kluyveri GN=EFT2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.457e-24
Identity = 45/79 (56.96%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A P++E ++ AI+ G+I PRDD KAR+++++++FGWD   A+KIWCFGP+  GPN+VVD  K VQYLN+I
Sbjct:  581 NKHNRIYLKAEPIDEEVSLAIEAGKINPRDDFKARARVMADDFGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_PICPA (Elongation factor 2 OS=Pichia pastoris GN=EFT1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.603e-24
Identity = 45/79 (56.96%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A+P++E L+ AI++G++ PRDD KAR++I+++E+GWD   A+KIWCFGP+ TG N+VVD  K VQYL++I
Sbjct:  581 NKHNRIYLKAQPIDEELSLAIEEGKVHPRDDFKARARIMADEYGWDVTDARKIWCFGPDGTGANLVVDQSKAVQYLHEI 659          
The following BLAST results are available for this feature:
BLAST of CX289260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF2_BETVU5.794e-4092.41Elongation factor 2 OS=Beta vulgaris PE=2 SV=1[more]
EF2_CHLKE2.133e-3482.28Elongation factor 2 OS=Chlorella kessleri PE=2 SV=... [more]
EF2_CRYPV4.762e-2660.76Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
EF2_SACCA4.031e-2559.49Elongation factor 2 OS=Saccharomyces castellii GN=... [more]
EF2_KLULA8.981e-2559.49Elongation factor 2 OS=Kluyveromyces lactis GN=EFT... [more]
EF2_BOMMO2.001e-2460.76Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_CANGA2.613e-2456.96Elongation factor 2 OS=Candida glabrata GN=EFT1 PE... [more]
EF2_ASHGO2.613e-2456.96Elongation factor 2 OS=Ashbya gossypii GN=EFT1 PE=... [more]
EF2_SACKL4.457e-2456.96Elongation factor 2 OS=Saccharomyces kluyveri GN=E... [more]
EF2_PICPA7.603e-2456.96Elongation factor 2 OS=Pichia pastoris GN=EFT1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02011A03SK IF1 Citrus clementina cDNA clone C02011A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289260 ID=CX289260; Name=CX289260; organism=Citrus clementina; type=EST; length=253bp
GATGAGTAAGTCTCCAACAAGCATAATCGTCTCTACATGGAAGCCCGACC
TCTGGAAGAAGGTCTTGCTGAGGCCATAGATGATGGCCGCATTGGTCCAA
GGGATGATCCCAAGGCTCGATCTAAGATCTTGTCTGAGGAGTTCGGCTGG
GACAAGGATCTTGCGAAGAAGATTTGGTGTTTTGGTCCTGAGACCACTGG
CCCTAACATGGTCGTTGATATGTGTAAGGGAGTTCAATACTTGAATGACA
TTA
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