CX289264

Overview
NameCX289264
Unique NameCX289264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig305 contig Ccv1_Contig305:636..1250. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 3.299e-87
Identity = 157/205 (76.59%), Postives = 172/205 (83.90%), Query Frame = 1
Query:    1 PRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHG 615
            PRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLLD+P STAFYKL+LG ELDLHDI+ FDAE GK LQEL V++ RK +LE +  DN     DL  RG  IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHG
Sbjct: 1570 PRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDLCLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHG 1774          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.943e-49
Identity = 105/207 (50.72%), Postives = 133/207 (64.25%), Query Frame = 1
Query:    1 PRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHG 615
            PRPW  ++  S+      V++ F LLG V+AKALQDGR+LDLP S AFYKL+LG EL   DI   D E  K L EL  ++ RK+       D+     DL F G  IEDLCL+F LPGY DY L P   N  V+++NLEEYI  +V+ATV  GI +Q+EAFR+GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHG
Sbjct: 1200 PRPWSGTSTTSD------VLQKFVLLGTVVAKALQDGRVLDLPLSKAFYKLILGQELSSFDIHFVDPELCKTLVELQALVRRKKLFAEAHGDSGAAKCDLSFHGTKIEDLCLEFALPGYTDYDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHG 1400          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.899e-34
Identity = 85/209 (40.67%), Postives = 122/209 (58.37%), Query Frame = 1
Query:   16 PSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDL--HDIIPFDAEFGKILQELHVIICRKQHLE---SMTSDNCEEAVD-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG-RRELWEPAALAEHIKFDHG 615
            P    ++    +KV   FR LG++MAKA+ D RL+DLP    FYK +L  E  L  HD+   D    + +  L  I+ +K+ LE   S T ++ + A++ L   G  +EDL LDFTLPG+P+  LK G ++  V I+NLEEY+ LV+   +  G+ RQ ++FR GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHG
Sbjct: 1680 PFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHG 1888          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 66/207 (31.88%), Postives = 102/207 (49.28%), Query Frame = 1
Query:    1 PRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHG 615
            P P P    + E     + I  F  LG+ +A+++ D R++ + F+  F+   +   L +  +   D      L+ L  +I  K    + T        D++     +EDL LDFTLPG+P   L P   +  +   N+ +Y++ V+D TV  G+ +Q+EAF+ GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHG
Sbjct: 1355 PSPIPLLGSSPEN---ERKISLFFALGQFVARSIYDSRIISIQFNPLFFARNI--PLTISSVAKVDKGLANSLRYLEKLIPGKNPTNAET--------DIK-----LEDLHLDFTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHG 1543          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 63/192 (32.81%), Postives = 99/192 (51.56%), Query Frame = 1
Query:   52 KVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDI--IPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHG 615
            KVIE F  LG  +A++L D R+LD  FS  F++L+  H +   ++  +P D E   ++ EL         ++ + + + +  V  +     +E L L FT+PG  D  L PG  N  +N  N+EEYI  V+D  +  GI +Q++AF  GF++VF    + I  P EL  +     E W  A L  ++  +HG
Sbjct: 1199 KVIELFGYLGTFVARSLLDNRILDFRFSKVFFELL--HRMSTPNVTTVPSDVETCLLMIEL---------VDPLLAKSLKYIVANKDDNMTLESLSLTFTVPGNDDIELIPGGCNKSLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHG 1379          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 59/173 (34.10%), Postives = 91/173 (52.60%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL 570
            + YF+ +GR++AKAL DG+LLD+ F+ +FYK +LG ++  HDI   D ++ K L+ L         LE+  SD     +DL F     E+  + +      DY LKPG  N+ +      EY+ LV D  + + I  Q+ AF  G N++     + IF   EL+ L+ G  E+
Sbjct: 3382 LSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWL---------LENDVSD----ILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHILTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEI 3541          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL 570
            + YF+ +GR++AKAL DG+LLD+ F+ +FYK +LG ++  HDI   D ++ K L+ L         LE+  SD     +DL F     E+  + +      DY LKPG  N+ +      EY+ LV    +   I  Q+ AF  GFN++     + IF   EL+ L+ G  E+
Sbjct: 3405 LSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWL---------LENDVSD----ILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVAGHILTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISGLPEI 3564          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: NEDD4_DROME (E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster GN=Nedd4 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.579e-15
Identity = 52/170 (30.59%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPD-YILKPGDENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG 558
            + YF+ +GR+   A+  G+LLD  F   FYK++L   +DL D+   D E+   L  +               +N    ++L F        CLD  + G    + LKPG  N+D+ N   +EYI LV++      +  QM +F  GF  +  +  ++IF  HEL+ L+CG
Sbjct:  739 LSYFKFIGRIAGMAVYHGKLLDAFFIRPFYKMMLQKPIDLKDMESVDTEYYNSLMWI--------------KENDPRILELTF--------CLDEDVFGQKSQHELKPGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSIIPLNLIKIFDEHELELLMCG 886          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 59/186 (31.72%), Postives = 92/186 (49.46%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEH 597
            + YFR +GR +A AL  G+ +D  F+  FYK +L     L D+   D EF        ++  ++ +LE       E  ++L F    I+D+ +   L     + LK G EN+ +   N EEYI L+ D     G+  Q +AF  GFN+V  +  L+ F   EL+ +LCG +E+    W+  A+  H
Sbjct:  602 LTYFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESIDPEFYN-----SIVWIKENNLE-------ECGLELFF----IQDMEI---LGKVTTHELKEGGENIRVTEENKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH 768          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 57/186 (30.65%), Postives = 86/186 (46.24%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEH 597
            ++YFR +GR +A AL  G+ +D  FS  FYK +L   + L D+   D EF   L                  +N  E  DL    +  +++     L     + LKP   N+ +   N EEYI +V +  +  G+  Q +AF  GFN++     LQ F   EL+ LLCG +E+    W+  A+  H
Sbjct:  635 LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSL--------------IWVKENNIEECDLEMYFSVDKEI-----LGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRH 801          
The following BLAST results are available for this feature:
BLAST of CX289264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
UPL3_ARATH3.299e-8776.59E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH7.943e-4950.72E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN1.899e-3440.67Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO1.321e-1931.88Probable ubiquitin fusion degradation protein C12B... [more]
UFD4_YEAST3.255e-1832.81Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
UPL2_ARATH2.755e-1734.10E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
UPL1_ARATH4.700e-1734.10E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
NEDD4_DROME2.579e-1530.59E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila m... [more]
WWP2_MOUSE1.280e-1431.72NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
ITCH_HUMAN1.280e-1430.65E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011A07SK IF1 Citrus clementina cDNA clone C02011A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289264 ID=CX289264; Name=CX289264; organism=Citrus clementina; type=EST; length=615bp
CCTCGACCTTGGCCTCCTAGTGCTGATGCCTCTGAAGGTGGCCAGTTTAG
TAAAGTTATTGAATACTTCCGACTGCTTGGACGTGTAATGGCTAAAGCTC
TTCAAGATGGGAGGCTTTTAGACCTGCCATTTTCAACAGCATTCTACAAA
CTTGTTCTTGGTCACGAGCTTGATTTGCATGATATTATTCCCTTTGATGC
CGAGTTTGGGAAGATTTTGCAAGAGTTGCATGTCATCATTTGTCGAAAAC
AACATTTAGAATCAATGACCTCTGATAATTGCGAAGAAGCTGTGGACTTG
CGTTTTCGTGGGGCCCCGATTGAAGATCTTTGCCTGGATTTTACTCTTCC
TGGTTATCCAGACTATATTTTGAAACCAGGAGATGAAAATGTTGACATTA
ATAACTTGGAGGAATACATATCCTTGGTAGTTGATGCCACTGTCAAGACA
GGCATCATGCGGCAAATGGAAGCTTTTAGAGCTGGCTTCAATCAGGTCTT
TGACATCACATCATTACAAATATTTACTCCTCATGAATTGGACCATCTGC
TTTGTGGCCGTAGAGAGTTGTGGGAGCCTGCGGCGCTTGCTGAGCATATA
AAATTCGATCATGGA
back to top