CX289267

Overview
NameCX289267
Unique NameCX289267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289267 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 67/227 (29.52%), Postives = 101/227 (44.49%), Query Frame = -1 
Query:    1 WIIDSGASDHMTSISSLFDSYYPCP-GNKKVRVADXXXXXXXXXXXXXXXXXIEL--KNVLHVPKLSCNLLSVSKLTKDSNCCAVFFDSHCEFQDRDLGTMIGSASLREGLYYFDDYLSRNKQAQGLSSSISSNSARDQIM--LWHLRLGHPSFPYLKYLFPDLFKNV--DCTAFQCESCFLSKSHRVSYKAHTYRASKPFYLIHSDVWGPSKINTLTGKKWFVTFI 660
            W++D+ AS H T +  LF  Y     G  K+                       L  K+V HVP L  NL+S   L +D       ++S+  F ++      GS  + +G+     Y +  +  QG       N+A+D+I   LWH R+GH S   L+ L      +     T   C+ C   K HRVS++  + R      L++SDV GP +I ++ G K+FVTFI
Sbjct:  294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDG------YESY--FANQKWRLTKGSLVIAKGVARGTLYRTNAEICQG-----ELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFI 507
The following BLAST results are available for this feature:
BLAST of CX289267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
POLX_TOBAC2.829e-1429.52Retrovirus-related Pol polyprotein from transposon... [more]
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Properties
Property NameValue
Genbank descriptionC02011A10SK IF1 Citrus clementina cDNA clone C02011A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289267 ID=CX289267; Name=CX289267; organism=Citrus clementina; type=EST; length=702bp
TATGAATGTTACAAACCATTTTTTTCCAGTTAAAGTGTTGATTTTTGAAG
GTCCCCAAACATCACTATGAATTAAATAAAAAGGTTTTGAGGCACGATAA
GTATGTGCTTTATATGAAACTCGATGACTTTTAGATAAAAAACAACTTTC
ACACTGAAAAGCAGTACAATCAACATTTTTAAATAAATCTGGAAACAAAT
ATTTCAAATAAGGAAAGCTAGGGTGTCCTAGTCTAAGGTGCCAAAGCATT
ATTTGATCCCTAGCAGAGTTTGAACTAATACTACTGCTCAAACCTTGAGC
TTGTTTATTCCTTGATAAGTAGTCATCAAAATAGTAAAGACCTTCTCGCA
AACTAGCACTGCCAATCATCGTCCCCAAGTCCCTGTCCTGAAATTCACAA
TGAGAGTCAAAAAAGACAGCACAACAATTAGAATCTTTGGTTAATTTACT
GACAGATAACAGATTGCAAGAAAGTTTAGGGACATGTAGCACATTTTTAA
GCTCAATGGTTCCAGAGATTTTTATTGATCCTTTTCCAGCTATGGAAGAT
AAGCTTCCATCAGCAACTCTTACCTTTTTGTTACCAGGGCAAGGATAATA
GGAATCAAATAAACTAGAAATGCTAGTCATATGATCAGAAGCACCCGAAT
CAATAATCCATGGTGCAGTAGTTGAGTGGCTAAATAGAGCATTAATAATA
CT
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