CX289268

Overview
NameCX289268
Unique NameCX289268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14125 contig Ccv1_Contig14125:229..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 2.839e-83
Identity = 146/202 (72.28%), Postives = 170/202 (84.16%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607
            GF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM+++DGRVVSNFI QA++GEPLTV   G+QTR+
Sbjct:   98 GFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRA 298          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 2.839e-83
Identity = 146/202 (72.28%), Postives = 170/202 (84.16%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607
            GF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM+++DGRVVSNFI QA++GEPLTV   G+QTR+
Sbjct:   98 GFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRA 298          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 2.839e-83
Identity = 146/202 (72.28%), Postives = 170/202 (84.16%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607
            GF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM+++DGRVVSNFI QA++GEPLTV   G+QTR+
Sbjct:   98 GFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRA 298          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 2.839e-83
Identity = 146/202 (72.28%), Postives = 170/202 (84.16%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607
            GF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM+++DGRVVSNFI QA++GEPLTV   G+QTR+
Sbjct:   98 GFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRA 298          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 4.100e-82
Identity = 145/202 (71.78%), Postives = 168/202 (83.17%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607
            GF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM+++DGRVVSNFI QA++GE LTV   G QTR+
Sbjct:   99 GFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRA 299          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 1.558e-81
Identity = 144/202 (71.29%), Postives = 169/202 (83.66%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607
            GF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ+E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+G RM+++DGRVVSNFI QA++GE LTV   G+QTR+
Sbjct:   96 GFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRA 296          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20
Identity = 71/210 (33.81%), Postives = 110/210 (52.38%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN-IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIGSH+VDKL+EN   +VI++DN  TG+K+N+     +P+ E +  D+ +  L E      V+ + H A   +      NPV     NV+GT+N+L + ++  +   +  +S   VYG+P   P DE++     PI   S Y   K V E  +  Y+R +GIE  I R  N YG R +   +  V+S FI + ++ +   +   G QTR
Sbjct:    9 GFIGSHIVDKLIEN-NYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDLDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTR 207          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.755e-16
Identity = 62/216 (28.70%), Postives = 106/216 (49.07%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  ++G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  331 GFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKR 541          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.755e-16
Identity = 62/216 (28.70%), Postives = 106/216 (49.07%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  ++G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  332 GFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKR 542          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.909e-16
Identity = 61/216 (28.24%), Postives = 108/216 (50.00%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ +++ ++  +D    GS D + +++G+PRF  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLRDDRYDIYGLD---IGS-DAISRFLGNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYGMCDDKEFDEDHSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLMDGGAQKR 535          
The following BLAST results are available for this feature:
BLAST of CX289268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
UXS1_RAT2.839e-8372.28UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB2.839e-8372.28UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE2.839e-8372.28UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN2.839e-8372.28UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_XENTR4.100e-8271.78UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_DANRE1.558e-8171.29UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
GALE_METJA2.616e-2033.81Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
ARNA_PECCP1.755e-1628.70Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT1.755e-1628.70Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP53.909e-1628.24Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02011A11SK IF1 Citrus clementina cDNA clone C02011A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289268 ID=CX289268; Name=CX289268; organism=Citrus clementina; type=EST; length=608bp
TGGATTTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGA
ACGAGGTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTA
AGGAAATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGAC
TGAGCCATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTG
CCTCCCCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAAT
GTGATTGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAG
GATTTTGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATC
CCCAGGATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGT
TGCTATGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCA
TCGGCAGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATG
GACCCCGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCT
CAAGCAATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAAAC
TCGTAGTT
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