CX289269

Overview
NameCX289269
Unique NameCX289269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9376 contig Ccv1_Contig9376:780..1230. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289269 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.888e-17
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 2
Query:    2 NSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTNKGYTVFGYLPLVPIDDIAKAFKQ 196
            NSVK W KLN Y   H M D A+P AA +S +YN LV +MTN GY++ GYLPLVP+DDI KA+++
Sbjct:  144 NSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208          
BLAST of CX289269 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTNKGYTVFGYLPLVPIDDIAKAFKQ 196
            +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+   KGY V  Y+PLVP + I+K F +
Sbjct:  169 AVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of CX289269 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 2
Query:    5 SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTNKGYTVFGYLPLVPIDDIAKAFK 193
            +V AW  LN   LF  +A + VPTAA WS+KYN  V     +GYTV  YLPL+P + IAK F+
Sbjct:  167 AVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
The following BLAST results are available for this feature:
BLAST of CX289269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y1736_ARATH3.888e-1758.46REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
Y3550_ARATH4.163e-1151.56REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI4.163e-1150.79Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
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Properties
Property NameValue
Genbank descriptionC02011A12SK IF1 Citrus clementina cDNA clone C02011A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289269 ID=CX289269; Name=CX289269; organism=Citrus clementina; type=EST; length=451bp
AAATTCCGTGAAAGCATGGTATAAACTAAACCACTATGCATTGTTCCACA
CAATGGCAGATATGGCTGTTCCCACAGCTGCACAGTGGTCCAAGAAGTAT
AACCATCTTGTCGTGGAGATGACGAACAAGGGTTACACAGTCTTTGGCTA
TCTTCCTTTGGTTCCCATTGATGACATAGCCAAAGCTTTTAAGCAGAGTG
AAGCTCCCAAGAAAGAAGATGCTCCAGAGAAAGAAGATGCAAAGGAAAAG
GATTCAAGCTCAGATTCTGACTAAGAATTTACTTTTTGTCTGATGAGTTT
GCTTCATCTAGTGGTCTGGTTTTCAAAATTCTAGGCTTGAAGGTGTGGCC
GGGTGGTGGCACTATGGTTTGTAATCTGTAAATGACCTTTAAGACTTGGT
TTTCCCCATATGTGAATGGAGATAAATGGTTCATAAAAAAAAAAAAAAAA
A
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