CX289277

Overview
NameCX289277
Unique NameCX289277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14105 contig Ccv1_Contig14105:472..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.206e-41
Identity = 82/98 (83.67%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDDDAF+
Sbjct:  112 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.206e-41
Identity = 82/98 (83.67%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDDDAF+
Sbjct:  112 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.793e-40
Identity = 81/98 (82.65%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPDDDDDAFE
Sbjct:  124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.793e-40
Identity = 80/98 (81.63%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDD+ F+
Sbjct:  124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.018e-39
Identity = 81/98 (82.65%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               SQPLPDDDDD FE
Sbjct:  124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.961e-39
Identity = 80/98 (81.63%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPDDDD+AFE
Sbjct:  124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 5.052e-39
Identity = 79/98 (80.61%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D               +QPLPDDDDDAFE
Sbjct:  124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.125e-38
Identity = 79/98 (80.61%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV ID               +QPLPDDDD+AFE
Sbjct:  124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.507e-38
Identity = 78/98 (79.59%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID               +QPLPDDDDD FE
Sbjct:  124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221
[Close]
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.294e-38
Identity = 78/98 (79.59%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 294
            GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +  LPDDDD+AFE
Sbjct:  124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221
The following BLAST results are available for this feature:
BLAST of CX289277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RAN1B_LOTJA9.206e-4183.67GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA9.206e-4183.67GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN_VICFA7.793e-4082.65GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANA1_TOBAC7.793e-4081.63GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH1.018e-3982.65GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC2.961e-3981.63GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH5.052e-3980.61GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC1.125e-3880.61GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH2.507e-3879.59GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RANB1_TOBAC7.294e-3879.59GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionC02011B08SK IF1 Citrus clementina cDNA clone C02011B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289277 ID=CX289277; Name=CX289277; organism=Citrus clementina; type=EST; length=581bp
GGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTAC
CTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCA
ACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGG
GACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGT
ACAGATTGACTTAGCTGCACAGCAACAACATGAAGCCGAGCTTGCCGCAG
CAGCTAGCCAGCCTCTTCCTGATGACGATGATGATGCATTTGAGTAGAGA
GGAACTGCTTGGACGGGTGTAGGCGCAACCTCTCATACTGCTGCTTGACT
TAAAAATGCTGTTATTTTGGAAATTTTCAACACATGGCGGAGATTTGGTT
ATCAGCGTAGGGGTGACCATCGAGAACAATGGATTATAGTAGTTAGGTTG
TACCTTTAGATACTTGTTGGAGACTCTTTTTATGCTTGTTTTTTTTTGGG
AGTTTTCTTATTACTGGAATGATGTTTCAGTGACGTGGATTATGCCATTC
CAATACTTTTATGCAAAAAAAAAAAAAAAAA
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