CX289284

Overview
NameCX289284
Unique NameCX289284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11161 contig Ccv1_Contig11161:348..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289284 vs. ExPASy Swiss-Prot
Match: CAES_ARATH (Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.441e-46
Identity = 95/138 (68.84%), Postives = 108/138 (78.26%), Query Frame = 1 
Query:    1 GTAIKEWARGEELYESMVARSKESVNKSGGGIKALLWYQGESDASTDHDAEAYQQNMEAFISNVREDLELPSLPIIQVALASGDKYKEKVREAQLGINLQNVVCVDAKGLHLKEDHLHLTTEAQVKLGHMLAEAYLKH 414
            GTAIKEW RG  LYE MV R++ES  K GG IKA+LWYQGESD    HDAE+Y  NM+  I N+R DL LPSLPIIQVA+ASG  Y +KVREAQLG+ L NVVCVDAKGL LK D+LHLTTEAQV+LG  LA+AYL +
Sbjct:  122 GTAIKEWERGSHLYERMVKRTEES-RKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGLSLAQAYLSN 258
The following BLAST results are available for this feature:
BLAST of CX289284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CAES_ARATH1.441e-4668.84Probable carbohydrate esterase At4g34215 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02011C04SK IF1 Citrus clementina cDNA clone C02011C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289284 ID=CX289284; Name=CX289284; organism=Citrus clementina; type=EST; length=415bp
GGAACCGCCATCAAAGAGTGGGCCCGTGGAGAGGAGTTGTACGAGAGTAT
GGTGGCGAGGAGTAAAGAGAGTGTGAACAAGAGCGGCGGAGGGATTAAGG
CTTTGTTGTGGTACCAAGGGGAGAGTGACGCGTCGACGGATCACGATGCC
GAGGCTTACCAGCAGAACATGGAGGCATTCATTAGTAATGTCAGGGAAGA
TCTTGAGTTGCCTTCACTCCCTATAATTCAGGTAGCGCTTGCTTCAGGAG
ACAAGTACAAAGAGAAAGTAAGGGAAGCGCAACTGGGGATCAATCTTCAA
AATGTTGTGTGTGTCGATGCCAAGGGATTGCATCTCAAAGAAGATCACCT
CCACCTTACCACGGAAGCTCAGGTTAAGTTAGGTCACATGCTGGCCGAGG
CGTACTTGAAGCATT
back to top