CX289285

Overview
NameCX289285
Unique NameCX289285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:46..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.115e-22
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQ
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQ 120          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.115e-22
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQ
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQ 124          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.245e-22
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPTSDTYI FGEAKIEDLSSQ
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQ 127          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.325e-20
Identity = 45/56 (80.36%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++FGEAKIEDLSSQ
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQ 134          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.966e-20
Identity = 44/56 (78.57%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP S+TY++FGEAKI+D+SSQ
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQ 129          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.770e-19
Identity = 40/56 (71.43%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP ++TY++FGEAK++DLSSQ
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQ 126          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.276e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ I GV+R+T++KSKNILFVI+KPDVFKSP SDTY+VFGEAKIEDLS Q
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQ 1418          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACAD_HUMAN (NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.276e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ I GV+R+T++KSKNILFVI+KPDVFKSP SDTY+VFGEAKIEDLS Q
Sbjct: 1420 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQ 1475          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 133          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct:   77 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 132          
The following BLAST results are available for this feature:
BLAST of CX289285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA3_ARATH1.115e-2292.86Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH1.115e-2292.86Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA3.245e-2291.07Nascent polypeptide-associated complex subunit alp... [more]
NACA2_ARATH2.325e-2080.36Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH3.966e-2078.57Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH9.770e-1971.43Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE1.276e-1876.79NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACAD_HUMAN1.276e-1876.79NAC-alpha domain-containing protein 1 OS=Homo sapi... [more]
NACA_XENTR1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02011C06SK IF1 Citrus clementina cDNA clone C02011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289285 ID=CX289285; Name=CX289285; organism=Citrus clementina; type=EST; length=411bp
TCTCGTTCTCAAGTCTCAACACCCAGCCCAAAAAAAATGACTGCTCAGTC
TCAAGAAGAGCTCCTCGCTGCCCATCTTGAAGAGCAAAAGCTCAACCCCG
ATGAGCCTGTAGTTGAGGACGACGATGATGAGGATGATGATGAGGAGGAT
GAGGATGATGACAAGGATGAAGACGATGTGGAAGGGAAAGGAGATGGAAG
TGGTCGCTCAAAACAGAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAATGT
TGAAACTTGGAATGAAGCCAATCCCTGGTGTCAGTCGAGTTACAGTTAAA
AAGAGCAAAAATATTTTGTTTGTTATCTCCAAACCAGATGTTTTCAAGAG
TCCTACATCTGACACATACATTGTCTTTGGGGAAGCAAAGATCGAGGATC
TGAGTTCACAA
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