CX289287

Overview
NameCX289287
Unique NameCX289287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15340 contig Ccv1_Contig15340:196..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.665e-22
Identity = 59/135 (43.70%), Postives = 76/135 (56.30%), Query Frame = 3
Query:   30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431
            +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC
Sbjct:   47 QLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIRDEIAGC 181          
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.665e-22
Identity = 59/135 (43.70%), Postives = 76/135 (56.30%), Query Frame = 3
Query:   30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431
            +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC
Sbjct:   47 QLILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGC 181          
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.546e-22
Identity = 59/135 (43.70%), Postives = 76/135 (56.30%), Query Frame = 3
Query:   30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431
            +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC
Sbjct:   47 QLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGC 181          
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.546e-22
Identity = 59/135 (43.70%), Postives = 76/135 (56.30%), Query Frame = 3
Query:   30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431
            +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC
Sbjct:   47 QLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGC 181          
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.910e-20
Identity = 49/134 (36.57%), Postives = 77/134 (57.46%), Query Frame = 3
Query:   30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431
            +L LAR+I E   L S+K++D D+FER F QLK YY D    + PS  EY I          +++ +EFH            N  IK  + +E+S  EG+YN+++ ++  VP+E Y  F+D+LA +++++IA C
Sbjct:   57 DLVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANC 190          
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.500e-12
Identity = 42/134 (31.34%), Postives = 72/134 (53.73%), Query Frame = 3
Query:   36 TLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX--NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431
            + AR+++E+ VL+S++  D ++F R   Q+ P+Y D+   L PS    ++          +NRIAEFH              +P ++  + LEQ+ MEGA+++V S  ++     + YFM ++   VR+EIA C
Sbjct:   48 SFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATC 178          
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_CAEEL (26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.500e-12
Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 3
Query:   42 ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIA 425
            ++D+YE +VLL++   D + F+    Q+  YYT A +    S N++++           NR+++FH             N  I   V +EQS MEGAYN+V+  ++N+P+  Y  F+ ++  T+R EIA
Sbjct:   48 SKDLYEISVLLAILKHDFETFDDYINQMHTYYTMAPEN---SENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIA 173          
The following BLAST results are available for this feature:
BLAST of CX289287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSMD8_PONAB2.665e-2243.7026S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_MOUSE2.665e-2243.7026S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_HUMAN4.546e-2243.7026S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_BOVIN4.546e-2243.7026S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_DICDI1.910e-2036.57Probable 26S proteasome non-ATPase regulatory subu... [more]
RPN12_SCHPO2.500e-1231.3426S proteasome regulatory subunit rpn12 OS=Schizos... [more]
PSMD8_CAEEL2.500e-1231.7826S proteasome non-ATPase regulatory subunit 8 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC02011C08SK IF1 Citrus clementina cDNA clone C02011C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289287 ID=CX289287; Name=CX289287; organism=Citrus clementina; type=EST; length=432bp
TGTTTGAAGATACGCCTAATGCAATATGTGAATTGACGTTAGCTAGGGAC
ATTTACGAGCACGCTGTTCTCCTAAGTGTGAAGGTGGAGGATCAAGATGC
TTTTGAGAGGGATTTTTTTCAATTGAAGCCCTATTATACAGATGCTGGGA
AGCGCCTTCCACCATCCCCAAATGAGTACATGATTTTGGGTCTTAACTTG
TTGAGACTCTTAGTCCAGAACAGAATTGCTGAATTCCATACTGAACTGGA
ATTGCTTTCATCTACTGCATTGGAGAATCCTTGCATCAAGCACGCGGTGG
AGTTGGAGCAATCATTTATGGAAGGGGCTTATAATCGTGTCTTGAGTGCC
AAACAGAATGTACCTAATGAAACTTATGGTTATTTCATGGATCTCCTAGC
TAAGACAGTAAGAGATGAGATAGCTGGATGTA
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