CX289287
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.665e-22 Identity = 59/135 (43.70%), Postives = 76/135 (56.30%), Query Frame = 3 Query: 30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431 +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC Sbjct: 47 QLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIRDEIAGC 181
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.665e-22 Identity = 59/135 (43.70%), Postives = 76/135 (56.30%), Query Frame = 3 Query: 30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431 +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC Sbjct: 47 QLILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGC 181
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 4.546e-22 Identity = 59/135 (43.70%), Postives = 76/135 (56.30%), Query Frame = 3 Query: 30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431 +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC Sbjct: 47 QLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGC 181
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 4.546e-22 Identity = 59/135 (43.70%), Postives = 76/135 (56.30%), Query Frame = 3 Query: 30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431 +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC Sbjct: 47 QLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGC 181
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 1.910e-20 Identity = 49/134 (36.57%), Postives = 77/134 (57.46%), Query Frame = 3 Query: 30 ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431 +L LAR+I E L S+K++D D+FER F QLK YY D + PS EY I +++ +EFH N IK + +E+S EG+YN+++ ++ VP+E Y F+D+LA +++++IA C Sbjct: 57 DLVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANC 190
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.500e-12 Identity = 42/134 (31.34%), Postives = 72/134 (53.73%), Query Frame = 3 Query: 36 TLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX--NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 431 + AR+++E+ VL+S++ D ++F R Q+ P+Y D+ L PS ++ +NRIAEFH +P ++ + LEQ+ MEGA+++V S ++ + YFM ++ VR+EIA C Sbjct: 48 SFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATC 178
BLAST of CX289287 vs. ExPASy Swiss-Prot
Match: PSMD8_CAEEL (26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.500e-12 Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 3 Query: 42 ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIA 425 ++D+YE +VLL++ D + F+ Q+ YYT A + S N++++ NR+++FH N I V +EQS MEGAYN+V+ ++N+P+ Y F+ ++ T+R EIA Sbjct: 48 SKDLYEISVLLAILKHDFETFDDYINQMHTYYTMAPEN---SENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIA 173 The following BLAST results are available for this feature:
BLAST of CX289287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289287 ID=CX289287; Name=CX289287; organism=Citrus clementina; type=EST; length=432bpback to top |