CX289292

Overview
NameCX289292
Unique NameCX289292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13488 contig Ccv1_Contig13488:668..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289292 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.118e-41
Identity = 82/120 (68.33%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    4 FLDWEVNEQLTQVKSETSEASNNPQSLLLEAIHSAGYSGALTNPLLAPESAINRLNSTLLEEFGAENYTGPRMELAASGVEHDQLALVAQPLLSDLPSIHPREEPKSAYTGRDYRCQADS 363
            FLDWEV EQL +VK+E SE S NPQ LLLEA+HSAGY+G   N L+A E+ INRLNST+LEEF AENYT PRM LAASGVEH++   VA+PLLSDLP +   EEPK  Y G DYRCQAD+
Sbjct:  183 FLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINRLNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDYRCQADA 302          
BLAST of CX289292 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.161e-35
Identity = 72/115 (62.61%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    4 FLDWEVNEQLTQVKSETSEASNNPQSLLLEAIHSAGYSGALTNPLLAPESAINRLNSTLLEEFGAENYTGPRMELAASGVEHDQLALVAQPLLSDLPSIHPREEPKSAYTGRDYR 348
            FLDWEVNE+L ++K E +E + NP   LLEAIHSAGYSG L +PL APESA++RLN  LLEEF  EN+T  RM LAASGVEH++L  VA+PL SDLP++ P+  PKS Y G D+R
Sbjct:  186 FLDWEVNEELRKMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDRLNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLTSDLPNVPPQLAPKSQYVGGDFR 300          
BLAST of CX289292 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.876e-34
Identity = 71/115 (61.74%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    4 FLDWEVNEQLTQVKSETSEASNNPQSLLLEAIHSAGYSGALTNPLLAPESAINRLNSTLLEEFGAENYTGPRMELAASGVEHDQLALVAQPLLSDLPSIHPREEPKSAYTGRDYR 348
            FLDWEVNE+L +VK E  E + NP   LLEA+HSAGYSGAL NPL APESAI  L   +LE F  ENYT  RM LAASGV+H++L  V +PLLSDLP++    EPKS Y G D+R
Sbjct:  182 FLDWEVNEELRKVKVEIGEFATNPMGFLLEAVHSAGYSGALANPLYAPESAITGLTGEVLENFVFENYTASRMVLAASGVDHEELLKVVEPLLSDLPNVPRPAEPKSQYVGGDFR 296          
BLAST of CX289292 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 1
Query:    4 FLDWEVNEQLTQVKSETSEASNNPQSLLLEAIHSAGYSGALTNPLLAPESAINRLNSTLLEEFGAENYTGPRMELAASGVEHDQLALVAQPLLS 285
            F  WEV +   Q+K + + A  NPQ+ ++E +H+A Y  AL NPL  P+  I ++ S  L  F   ++T  RM L   GV H  L  VA+  L+
Sbjct:  146 FRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALANPLYCPDYRIGKVTSEELHYFVQNHFTSARMALIGLGVSHPVLKQVAEQFLN 239          
The following BLAST results are available for this feature:
BLAST of CX289292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MPPA_SOLTU4.118e-4168.33Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH1.161e-3562.61Probable mitochondrial-processing peptidase subuni... [more]
MPPA2_ARATH4.876e-3461.74Probable mitochondrial-processing peptidase subuni... [more]
QCR2_HUMAN5.800e-1137.23Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionC02011D04SK IF1 Citrus clementina cDNA clone C02011D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289292 ID=CX289292; Name=CX289292; organism=Citrus clementina; type=EST; length=378bp
GTTTTTCTGGATTGGGAGGTCAACGAACAGCTCACACAGGTGAAATCTGA
GACTAGTGAGGCTTCCAACAATCCTCAAAGCTTGCTTTTGGAGGCAATTC
ACTCAGCTGGGTACTCTGGGGCATTGACTAATCCTCTTCTAGCCCCGGAA
TCTGCTATAAATAGATTAAACTCTACACTTCTCGAAGAATTTGGTGCTGA
AAATTATACTGGTCCTCGGATGGAACTTGCTGCTTCTGGTGTTGAACATG
ACCAGTTGGCGCTTGTAGCACAACCACTCTTATCTGACCTACCCAGTATC
CATCCTCGCGAAGAGCCCAAATCTGCGTACACTGGACGTGATTATCGTTG
TCAAGCTGATTCAGGGGACCAGATAACC
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