CX289294

Overview
NameCX289294
Unique NameCX289294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289294_ssr278 microsatellite CX289294_ssr278:278..292. BLAST: Citrus ESTs to Prunus persica proteins V1
CX289294_ssr293 microsatellite CX289294_ssr293:293..304. BLAST: Citrus ESTs to Prunus persica proteins V1
CX289294_ssr441 microsatellite CX289294_ssr441:441..452. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13688 contig Ccv1_Contig13688:463..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.422e-34
Identity = 81/178 (45.51%), Postives = 94/178 (52.81%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDIKREKRTIGFVCKNEKQPYXXXXXXXXXXXXXXXXXXXXTCPDLNLELRISPPSSADLHQQQPLIK 535
            DLKRGNFT+EEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLL+RGIDP THR +N+                                         KE+  + K  +  + K E  P                      CPDLNL+L+ISPP    ++  Q  +K
Sbjct:   64 DLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSIND-----------------------GTASQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSP------------------VQERCPDLNLDLKISPPCQQQINYHQENLK 200          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.885e-32
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 205
            DLKRGNFT+EEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL+NRGIDP +HRP+ E
Sbjct:   64 DLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQE 131          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.570e-31
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 205
            DLKRGNFT+EEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI+RKLL+RGIDP +HR +NE
Sbjct:   64 DLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINE 131          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.632e-30
Identity = 59/68 (86.76%), Postives = 65/68 (95.59%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 205
            DLKRGNFTD+ED++IIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI+RKLL+ GIDP THR +NE
Sbjct:   64 DLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINE 131          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.632e-30
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 205
            DLKRGNFT EED+LIIKLHSLLGNKWSLIA RLPGRTDNEIKNYWNTH++RKLL +GIDPATHRP+NE
Sbjct:   64 DLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINE 131          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.750e-30
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN 202
            DLKRGNF+ EEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL +RGIDP THR +N
Sbjct:   64 DLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDPVTHRAIN 130          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.203e-30
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN 202
            DLKRGNFT+EEDE+IIKLHSLLGNKWSLIAG LPGRTDNEIKNYWNTHI+RKL++RGIDP THR LN
Sbjct:   64 DLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGIDPQTHRSLN 130          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.805e-29
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPL 199
            DLKRGNFT +ED+LI+KLHSLLGNKWSLIA RLPGRTDNEIKNYWNTH+RRKLL RGIDP THRP+
Sbjct:   64 DLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGIDPVTHRPI 129          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.847e-25
Identity = 47/66 (71.21%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN 202
            +KRG  T +E++LI++LH LLGN+WSLIAGR+PGRTDNEIKNYWNTH+R+KLL +GIDP TH+PL+
Sbjct:   76 VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.480e-23
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRP 196
            D++RG F+D E+  I++LH+LLGNKWS IAG LPGRTDNEIKNYWNTH+R+KLL  GIDP TH P
Sbjct:   65 DIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGIDPVTHEP 129          
The following BLAST results are available for this feature:
BLAST of CX289294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MYB08_ANTMA5.422e-3445.51Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH3.885e-3291.18Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB3_ARATH9.570e-3189.71Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB6_ARATH1.632e-3086.76Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB32_ARATH1.632e-3088.24Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB1_HORVU4.750e-3089.55Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB30_ANTMA6.203e-3088.06Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB38_MAIZE1.805e-2986.36Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB5_ARATH7.847e-2571.21Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB39_ARATH1.480e-2370.77Transcription factor MYB39 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC02011D06SK IF1 Citrus clementina cDNA clone C02011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289294 ID=CX289294; Name=CX289294; organism=Citrus clementina; type=EST; length=536bp
CGACTTAAAGCGCGGTAATTTTACTGATGAAGAAGATGAACTCATTATCA
AACTCCATAGCCTCCTTGGTAACAAGTGGTCATTGATAGCCGGGAGGTTA
CCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACACACATAAG
AAGGAAGCTTCTGAACAGAGGGATTGATCCTGCGACACACAGGCCACTCA
ATGAGCCAGCAGTACCTGTAGCAGCAGCTCAAAGTGCTACAACTGCTGCT
CCTGCTGATGTGGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAACAACAAC
AACAATATCATTTTCGGCAGCAGCTGCAAAGGAGGATATAAAACGAGAGA
AAAGGACAATTGGGTTTGTTTGCAAAAATGAGAAACAGCCGTATCATCAT
CACAATCATCATCGTCATCAGCAGCAGCAAGTGATCGTCAAAGAAGAAGA
AGTGACGTGTCCAGACTTGAACCTTGAGCTCAGAATCAGCCCTCCATCAT
CTGCTGATCTTCATCAGCAGCAGCCATTGATTAAAA
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